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Tuesday

sci-libs/acml

AMD Core Math Library for x86 and amd64 CPUs

16 Oct 2012; Justin Lecher (jlec) -acml-3.6.0-r1.ebuild,
acml-3.6.1-r1.ebuild, acml-4.0.1.ebuild, acml-4.1.0-r1.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
4.1.0-r1
4.0.1
3.6.1-r1
sci-libs Homepage ACML ChangeLog Metadata Similar Bugs Forums

sci-libs/adolc

Automatic differentiation system for C/C++

*adolc-2.4.1 (26 May 2013)
26 May 2013; Sébastien Fabbro (bicatali) +adolc-2.4.1.ebuild,
-adolc-2.3.0-r1.ebuild, -files/adolc-2.3.0-libdir.patch,
-files/adolc-2.3.0-no-colpack.patch:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
2.4.1
2.4.0
sci-libs Homepage || ( EPL-1.0 GPL-2 ) ChangeLog Metadata Similar Bugs Forums

sci-libs/amd

Library to order a sparse matrix prior to Cholesky factorization

*amd-2.3.1 (12 Nov 2012)
12 Nov 2012; Sébastien Fabbro (bicatali) +amd-2.3.1.ebuild,
metadata.xml:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
2.3.1 ~
2.2.3 ~ ~
2.2.0
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/armadillo

Streamlined C++ linear algebra library

10 Apr 2013; Justin Lecher (jlec) armadillo-3.4.4.ebuild,
metadata.xml:
Fix typo for pkg-config, #465292
amd64-fbsdsparc-fbsdx86-fbsd
3.6.2
3.6.1
3.6.0
3.4.4
sci-libs Homepage LGPL-3 ChangeLog Metadata Similar Bugs Forums

sci-libs/arpack

27 Feb 2013; Justin Lecher (jlec) arpack-3.1.2-r1.ebuild,
files/arpack-3.1.2-test.patch:
Use detected pkg-config instead of generic
amd64-fbsdsparc-fbsdx86-fbsd
3.1.2-r1
3.1.2 ~
0.96-r3
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/arprec

Arbitrary precision float arithmetics and functions

*arprec-2.2.16 (11 Dec 2012)
11 Dec 2012; Sébastien Fabbro (bicatali) +arprec-2.2.16.ebuild,
-arprec-2.2.13.ebuild, -arprec-2.2.15.ebuild,
-files/arprec-2.2.15-fix-enabling.patch:
Version bump. Patch applied upstream. Fix mathtool according to bug #446418
thanks to James Cloos
amd64-fbsdsparc-fbsdx86-fbsd
2.2.16
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/balbes-db

The database for the BALBES automated crystallographic molecular replacement pipeline

21 Nov 2011; Justin Lecher (jlec) balbes-db-6.1.3-r1.ebuild:
keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123
amd64-fbsdsparc-fbsdx86-fbsd
6.1.3-r1
sci-libs Homepage ccp4 ChangeLog Metadata Similar Bugs Forums

sci-libs/beagle

Open BEAGLE, a versatile EC/GA/GP framework

26 Apr 2012; Justin Lecher (jlec) beagle-3.0.3.ebuild,
metadata.xml:
Move to EAPI=4, handle static-libs, use autotools-utils.eclass
amd64-fbsdsparc-fbsdx86-fbsd
3.0.3
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/blas-reference

Basic Linear Algebra Subprograms F77 reference implementations

*blas-reference-20070226-r3 (27 Feb 2013)
27 Feb 2013; Justin Lecher (jlec)
+blas-reference-20070226-r3.ebuild, +files/eselect.blas.reference-ng,
metadata.xml:
Add new version which only sets pc file with eselect
amd64-fbsdsparc-fbsdx86-fbsd
20070226-r3
20070226-r2 ~ ~
20070226 ~
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/bmrblib

API abstracting the BioMagResBank (BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/)

*bmrblib-1.0.2 (13 May 2013)
13 May 2013; Justin Lecher (jlec) +bmrblib-1.0.2.ebuild:
Version Bump
amd64-fbsdsparc-fbsdx86-fbsd
1.0.2
1.0.1_pre198
1.0.0-r1
1.0.0
sci-libs Homepage GPL-3 ChangeLog Metadata Similar Bugs Forums

sci-libs/btf

Algorithm for matrix permutation into block triangular form

*btf-1.2.0 (12 Nov 2012)
12 Nov 2012; Sébastien Fabbro (bicatali) +btf-1.2.0.ebuild,
metadata.xml:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
1.2.0 ~
1.1.3
1.1.2
1.1.0
1.0.1
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/buddy

Binary Decision Diagram Package

05 Feb 2013; Ulrich Müller (ulm) buddy-2.2.ebuild,
buddy-2.4.ebuild:
Specify LICENSE more precisely, see README file, bug 455570.
amd64-fbsdsparc-fbsdx86-fbsd
2.4
2.2
sci-libs Homepage buddy ChangeLog Metadata Similar Bugs Forums

sci-libs/camd

Library to order a sparse matrix prior to Cholesky factorization

*camd-2.3.1 (12 Nov 2012)
12 Nov 2012; Sébastien Fabbro (bicatali) +camd-2.3.1.ebuild,
metadata.xml:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
2.3.1 ~
2.2.3 ~ ~
2.2.2
2.2.0
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/cbflib

Library providing a simple mechanism for accessing CBF files and imgCIF files

*cbflib-0.9.2.10-r1 (31 May 2013)
31 May 2013; Justin Lecher (jlec) +cbflib-0.9.2.10-r1.ebuild:
Add compatibility symlink for headers
amd64-fbsdsparc-fbsdx86-fbsd
0.9.2.10-r1
0.9.2.10
0.9.2.4
0.9.2.2
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/cblas-reference

C wrapper interface to the F77 reference BLAS implementation

21 Feb 2013; Justin Lecher (jlec)
cblas-reference-20030223-r4.ebuild, cblas-reference-20030223-r5.ebuild,
metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
20030223-r5 ~ ~
20030223-r4 ~
sci-libs Homepage public-domain ChangeLog Metadata Similar Bugs Forums

sci-libs/ccfits

C++ interface for cfitsio

03 Aug 2012; Sébastien Fabbro (bicatali) ccfits-2.4.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
2.4
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/ccolamd

Constrained Column approximate minimum degree ordering algorithm

*ccolamd-2.8.0 (12 Nov 2012)
12 Nov 2012; Sébastien Fabbro (bicatali) +ccolamd-2.8.0.ebuild,
metadata.xml:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
2.8.0 ~
2.7.4 ~ ~
2.7.3
2.7.1
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/ccp4-libs

Protein X-ray crystallography toolkit - Libraries

29 May 2013; Justin Lecher (jlec) ccp4-libs-6.1.3-r12.ebuild,
ccp4-libs-6.1.3-r13.ebuild:
Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE)
amd64-fbsdsparc-fbsdx86-fbsd
6.1.3-r13
6.1.3-r12
6.1.3-r11
sci-libs Homepage ccp4 ChangeLog Metadata Similar Bugs Forums

sci-libs/ccpn-data

The Collaborative Computing Project for NMR - Data

29 May 2013; Justin Lecher (jlec)
ccpn-data-2.2.2_p121112-r1.ebuild:
Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE)
amd64-fbsdsparc-fbsdx86-fbsd
2.2.2_p121112-r1
2.2.2_p121112
2.2.2_p121012
2.2.2_p120511
2.1.5_p111011
sci-libs Homepage || ( CCPN LGPL-2.1 ) ChangeLog Metadata Similar Bugs Forums

sci-libs/cctbx

Computational Crystallography Toolbox

04 Jun 2013; Justin Lecher (jlec) cctbx-2010.03.29.2334-r7.ebuild:
Fix deps for new python eclasses
amd64-fbsdsparc-fbsdx86-fbsd
2010.03.29.2334-r7
2010.03.29.2334-r6
sci-libs Homepage cctbx-2.0 ChangeLog Metadata Similar Bugs Forums

sci-libs/cdd+

Another implementation of the double description method

02 Jan 2011; Pawel Hajdan jr (phajdan.jr) cdd+-077a.ebuild:
x86 stable wrt bug #349167
amd64-fbsdsparc-fbsdx86-fbsd
077a
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/cddlib

*cddlib-094g (03 Feb 2013)
03 Feb 2013; Justin Lecher (jlec) +cddlib-094g.ebuild,
+files/cddlib-094g-add-cdd_both_reps-binary.patch, metadata.xml:
Version Bump, #455096
amd64-fbsdsparc-fbsdx86-fbsd
094g
094f-r2
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/cdf

Common Data Format I/O library for multi-dimensional data sets

12 Nov 2012; Sébastien Fabbro (bicatali) cdf-3.4.1.ebuild:
Proper static libs removal
amd64-fbsdsparc-fbsdx86-fbsd
3.4.1
3.3.1
3.3.0
sci-libs Homepage CDF ChangeLog Metadata Similar Bugs Forums

sci-libs/ceres-solver

Nonlinear least-squares minimizer

*ceres-solver-1.6.0 (22 May 2013)
22 May 2013; Sébastien Fabbro (bicatali)
+ceres-solver-1.6.0.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
1.6.0
1.4.0
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/cfitsio

*cfitsio-3.340 (20 Mar 2013)
20 Mar 2013; Sébastien Fabbro (bicatali) +cfitsio-3.340.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
3.340
3.330
3.310
3.140
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/cgcode

Conjugate gradient Codes for large sparse linear systems

21 Feb 2013; Justin Lecher (jlec) cgcode-1.0-r2.ebuild,
metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
1.0-r2
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/cholmod

Sparse Cholesky factorization and update/downdate library

10 Apr 2013; Justin Lecher (jlec) cholmod-2.0.1.ebuild:
Fix typo for pkg-config usage
amd64-fbsdsparc-fbsdx86-fbsd
2.0.1 ~ ~
1.7.4 ~ ~
1.6.0-r1
sci-libs Homepage minimal? ( LGPL-2.1 ) !minimal? ( GPL-2 ) ChangeLog Metadata Similar Bugs Forums

sci-libs/cifparse-obj

Provides an object-oriented application interface to information in mmCIF format

02 Jun 2012; Justin Lecher (jlec) cifparse-obj-7.025.ebuild,
+files/cifparse-obj-7.025-gcc4.7.patch:
Fix for gcc-4.7
amd64-fbsdsparc-fbsdx86-fbsd
7.025
6.302
sci-libs Homepage PDB ChangeLog Metadata Similar Bugs Forums

sci-libs/clapack

f2c'ed version of LAPACK

*clapack-3.2.1-r7 (12 Dec 2012)
12 Dec 2012; Justin Lecher (jlec) +clapack-3.2.1-r7.ebuild,
+files/clapack-3.2.1-findblas-r7.patch, metadata.xml:
Add libdir path to linker flags, #446930; don't build testsuite with fPIC
amd64-fbsdsparc-fbsdx86-fbsd
3.2.1-r7
3.2.1-r6
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/clashscore-db

Clashscore-db for clashlist

13 Jun 2012; Jeff Horelick (jdhore) clashscore-db-3.17.ebuild:
marked x86 per bug 419879
amd64-fbsdsparc-fbsdx86-fbsd
3.17
sci-libs Homepage richardson ChangeLog Metadata Similar Bugs Forums

sci-libs/clipper

Object-oriented libraries for crystallographic data and crystallographic computation

*clipper-2.1_p100511-r1 (28 May 2013)
28 May 2013; Justin Lecher (jlec) +clipper-2.1_p100511-r1.ebuild,
+files/2.1_p100511-makefile.patch,
+files/clipper-2.1_p100511-outofsourcebuild.patch, metadata.xml:
Rename for new version schema
amd64-fbsdsparc-fbsdx86-fbsd
20100511-r1
2.1_p100511-r1
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/cln

Class library (C++) for numbers

01 Jan 2013; Agostino Sarubbo (ago) cln-1.3.2-r1.ebuild:
Stable for arm, wrt bug #446100
amd64-fbsdsparc-fbsdx86-fbsd
1.3.2-r1 ~
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/cminpack

C implementation of the MINPACK nonlinear optimization library

05 Feb 2013; Ulrich Müller (ulm) cminpack-1.3.0.ebuild:
Specify LICENSE more precisely, see CopyrightMINPACK.txt, bug 455574.
amd64-fbsdsparc-fbsdx86-fbsd
1.3.0
sci-libs Homepage minpack ChangeLog Metadata Similar Bugs Forums

sci-libs/cmpfit

MINPACK-1 Least Squares Fitting Library in C

05 Feb 2013; Ulrich Müller (ulm) cmpfit-1.2.ebuild:
Specify LICENSE more precisely, see DISCLAIMER file, bug 455572.
amd64-fbsdsparc-fbsdx86-fbsd
1.2
sci-libs Homepage public-domain minpack ChangeLog Metadata Similar Bugs Forums

sci-libs/colamd

Column approximate minimum degree ordering algorithm

08 Dec 2012; Markus Meier (maekke) colamd-2.8.0.ebuild:
add ~arm, bug #440908
amd64-fbsdsparc-fbsdx86-fbsd
2.8.0 ~
2.7.4 ~ ~
2.7.3
2.7.1
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/colpack

C++ algorithms for specialized vertex coloring problems

17 Sep 2012; Sébastien Fabbro (bicatali)
+files/colpack-1.0.8-no-bin.patch, colpack-1.0.8.ebuild:
Avoid installing a development executable on a non-standard directory
amd64-fbsdsparc-fbsdx86-fbsd
1.0.8
1.0.6
sci-libs Homepage GPL-3 LGPL-3 ChangeLog Metadata Similar Bugs Forums

sci-libs/coot-data

Data for the Crystallographic Object-Oriented Toolkit

21 Nov 2011; Justin Lecher (jlec) coot-data-2.ebuild:
keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123
amd64-fbsdsparc-fbsdx86-fbsd
2
sci-libs Homepage GPL-3 ChangeLog Metadata Similar Bugs Forums

sci-libs/cqrlib

An ANSI C implementation of a utility library for quaternion arithmetic and quaternion rotation math

04 Dec 2012;(ago) cqrlib-1.1.2-r1.ebuild:
Stable for x86, wrt bug #440370
amd64-fbsdsparc-fbsdx86-fbsd
1.1.2-r1
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/cxsparse

Extended sparse matrix package

12 Nov 2012; Sébastien Fabbro (bicatali) cxsparse-3.1.1.ebuild:
reintroduced dropped ~x86-fbsd
amd64-fbsdsparc-fbsdx86-fbsd
3.1.1 ~
2.2.6 ~
2.2.5
2.2.3
2.2.1
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/deap

Novel evolutionary computation framework

*deap-0.9.1 (29 May 2013)
29 May 2013; Sławek Lis (slis) +deap-0.9.1.ebuild, +metadata.xml:
Added deap package
amd64-fbsdsparc-fbsdx86-fbsd
0.9.1
sci-libs Homepage LGPL-3 ChangeLog Metadata Similar Bugs Forums

sci-libs/djbfft

Extremely fast library for floating-point convolution

27 Dec 2012; Raúl Porcel (armin76) djbfft-0.76-r1.ebuild:
alpha/sh/sparc stable wrt #442748
amd64-fbsdsparc-fbsdx86-fbsd
0.76-r1 ~ ~
sci-libs Homepage public-domain ChangeLog Metadata Similar Bugs Forums

sci-libs/dlib

*dlib-18.0 (07 Feb 2013)
07 Feb 2013; Sébastien Fabbro (bicatali) +dlib-18.0.ebuild,
-dlib-17.48.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
18.0
17.49
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/dsdp

Software for interior-point for semidefinite programming

21 Feb 2013; Justin Lecher (jlec) dsdp-5.8-r2.ebuild,
metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
5.8-r2
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/exodusii

Model developed to store and retrieve transient data for finite element analyses

13 Dec 2012; Justin Lecher (jlec) exodusii-5.22b.ebuild,
metadata.xml:
fox long description and keyword correctly
amd64-fbsdsparc-fbsdx86-fbsd
5.22b
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/fetk

The Finite Element ToolKit - Meta package

*fetk-1.5 (16 Apr 2011)
16 Apr 2011; Justin Lecher (jlec) +fetk-1.5.ebuild, +metadata.xml:
New addition, meta ebuild around fetk libs
amd64-fbsdsparc-fbsdx86-fbsd
1.5
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/fftw

Fast C library for the Discrete Fourier Transform

03 May 2013; Justin Lecher (jlec) fftw-2.1.5-r8.ebuild:
Fix obsolete macros to work with automake-1.13, #468456
amd64-fbsdsparc-fbsdx86-fbsd
3.3.3-r2
3.3.3-r1
3.3.3
3.2.2-r2
3.2.2
2.1.5-r8
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/flann

Library for performing fast approximate nearest neighbor searches in high dimensional spaces

03 Aug 2012; Sébastien Fabbro (bicatali) flann-1.7.1.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
1.7.1
1.6.11
1.6.10
1.6.8
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/freesteam

Open source implementation of IF97 steam tables

*freesteam-9999 (15 Dec 2012)
15 Dec 2012; Michał Górny (mgorny) +freesteam-9999.ebuild:
Import the live ebuild.
amd64-fbsdsparc-fbsdx86-fbsd
9999
2.0
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sci-libs/galib

Library for genetic algorithms in C++ programs

05 Sep 2012; Justin Lecher (jlec) galib-2.4.6.ebuild,
galib-2.4.7.ebuild, metadata.xml:
Correct license found by hanno and ulm, #434038
amd64-fbsdsparc-fbsdx86-fbsd
2.4.7
2.4.6
sci-libs Homepage BSD examples? ( GPL-2 ) ChangeLog Metadata Similar Bugs Forums

sci-libs/gamer

Geometry-preserving Adaptive MeshER

*gamer-1.5-r1 (30 May 2012)
30 May 2012; Justin Lecher (jlec) +files/1.5-underlinking.patch,
+gamer-1.5-r1.ebuild:
Fix underlinking
amd64-fbsdsparc-fbsdx86-fbsd
1.5-r1
1.5
1.4
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/gaul-devel

Genetic Algorithm Utility Library

03 Aug 2012; Sébastien Fabbro (bicatali)
gaul-devel-0.1849-r2.ebuild, metadata.xml:
Added static-libs, keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
0.1849-r2
0.1849-r1
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/gdal

Translator library for raster geospatial data formats (includes OGR support)

23 Apr 2013; Agostino Sarubbo (ago) gdal-1.9.2.ebuild:
Stable for ppc64, wrt bug #450682
amd64-fbsdsparc-fbsdx86-fbsd
1.9.2
1.9.1
1.8.1-r1
1.6.3-r1
sci-libs Homepage MIT ChangeLog Metadata Similar Bugs Forums

sci-libs/geos

Geometry engine library for Geographic Information Systems

12 Apr 2013; Vicente Olivert Riera (vincent) geos-3.3.8-r1.ebuild:
x86 stable, wrt bug #436432
amd64-fbsdsparc-fbsdx86-fbsd
3.3.8-r1
3.3.7
3.3.5
3.3.4
3.3.3
3.2.2
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/gerris

Gerris Flow Solver

21 Feb 2013; Justin Lecher (jlec) -gerris-20100519.ebuild,
-gerris-20111123.ebuild, gerris-20120731.ebuild, metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config;
drop old
amd64-fbsdsparc-fbsdx86-fbsd
20120731
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/getdata

Reference implementation of the Dirfile, format for time-ordered binary data

18 Oct 2012; Justin Lecher (jlec) getdata-0.8.0.ebuild,
metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
0.8.0
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/gpp4

A standalone, drop-in replacement for the CCP4 library

18 Oct 2012; Justin Lecher (jlec) gpp4-1.3.1.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
1.3.1
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/grib_api

Library for decoding WMO FM-92 GRIB messages

13 Jun 2013; Michael Weber (xmw) grib_api-1.9.16.ebuild:
Depend on SLOT=0 of media-libs/openjpeg (bug 440086)
amd64-fbsdsparc-fbsdx86-fbsd
1.9.16
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sci-libs/gsl

The GNU Scientific Library

29 Mar 2013; Justin Lecher (jlec) gsl-1.14-r1.ebuild,
gsl-1.15.ebuild:
Move compiler specific checks into src_prepare to macke the package binary
friendly, #463724
amd64-fbsdsparc-fbsdx86-fbsd
1.15 ~
1.14-r1 ~
1.14 ~
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sci-libs/gts

GNU Triangulated Surface Library

17 Dec 2012; Agostino Sarubbo (ago) gts-20120706.ebuild:
Add ~ppc64, wrt bug #419621
amd64-fbsdsparc-fbsdx86-fbsd
20120706
20111025-r1
20100321-r3
sci-libs Homepage LGPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/hdf

General purpose library and format for storing scientific data

25 Feb 2013; Agostino Sarubbo (ago) hdf-4.2.8.ebuild:
Stable for x86, wrt bug #449226
amd64-fbsdsparc-fbsdx86-fbsd
4.2.9
4.2.8
sci-libs Homepage NCSA-HDF ChangeLog Metadata Similar Bugs Forums

sci-libs/hdf5

28 Feb 2013; Kacper Kowalik (xarthisius) -hdf5-1.8.8-r1.ebuild,
-hdf5-1.8.9-r2.ebuild, hdf5-1.8.10_p1.ebuild:
Drop old, add subslot thanks to courtesy of William Throwe <wtt6@cornell.edu>.
Fixes bug #452622
amd64-fbsdsparc-fbsdx86-fbsd
1.8.10_p1
1.8.10 ~
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sci-libs/hypre

Parallel matrix preconditioners library

21 Feb 2013; Justin Lecher (jlec) hypre-2.8.0b-r1.ebuild,
metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
2.8.0b-r1
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sci-libs/idlmarkwardt

Craig Markwardt IDL procedures (MPFIT, CMSVLIB, etc)

*idlmarkwardt-20130418 (12 Jun 2013)
12 Jun 2013; Sébastien Fabbro (bicatali)
+idlmarkwardt-20130418.ebuild, -idlmarkwardt-20120524.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
20130418
20121110
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sci-libs/inchi

A program and library for generating standard and non-standard InChI and InChIKeys

20 Feb 2013; Agostino Sarubbo (ago) inchi-1.04.ebuild:
Add ~arm, wrt bug #455960
amd64-fbsdsparc-fbsdx86-fbsd
1.04
1.03
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sci-libs/indilib

02 Apr 2013; Agostino Sarubbo (ago) indilib-0.9.6.ebuild:
Stable for ppc64, wrt bug #462890
amd64-fbsdsparc-fbsdx86-fbsd
0.9.6
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sci-libs/io_lib

General purpose trace and experiment file reading/writing interface

15 Oct 2012; Agostino Sarubbo (ago) io_lib-1.10.1.ebuild:
Stable for amd64, wrt bug #436888
amd64-fbsdsparc-fbsdx86-fbsd
1.12.5
1.11.2.1
1.10.1
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sci-libs/ipp

*ipp-7.1.1.146 (14 Feb 2013)
14 Feb 2013; Justin Lecher (jlec) +ipp-7.1.1.146.ebuild:
Version Bump
amd64-fbsdsparc-fbsdx86-fbsd
7.1.1.146
7.1.1.117
7.1.0.079
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sci-libs/itpp

C++ library of mathematical, signal processing and communication

21 Feb 2013; Justin Lecher (jlec) -itpp-4.0.6.ebuild,
itpp-4.2-r1.ebuild, itpp-4.2-r2.ebuild, metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
4.2-r2
4.2-r1
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sci-libs/jama

Java-like matrix C++ templates

03 Aug 2012; Sébastien Fabbro (bicatali) jama-1.2.5.ebuild:
Keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
1.2.5
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sci-libs/jmol-acme

Portions of the Acme collection required for jMol

26 Jun 2011; Justin Lecher (jlec) jmol-acme-1.0.ebuild,
metadata.xml:
Straight out QA issues
amd64-fbsdsparc-fbsdx86-fbsd
1.0
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sci-libs/klu

Sparse LU factorization for circuit simulation

*klu-1.2.1 (12 Nov 2012)
12 Nov 2012; Sébastien Fabbro (bicatali) +klu-1.2.1.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
1.2.1
1.1.3
1.1.2
1.1.1
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sci-libs/lapack-reference

FORTRAN reference implementation of LAPACK Linear Algebra PACKage

*lapack-reference-3.2.1-r3 (27 Feb 2013)
27 Feb 2013; Justin Lecher (jlec)
-lapack-reference-3.2.1-r2.ebuild, +lapack-reference-3.2.1-r3.ebuild:
Fix pc file for new setup
amd64-fbsdsparc-fbsdx86-fbsd
3.2.1-r3
3.2.1-r1 ~ ~
3.1.1-r1 ~
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sci-libs/ldl

Simple but educational LDL^T matrix factorization algorithm

*ldl-2.1.0 (12 Nov 2012)
12 Nov 2012; Sébastien Fabbro (bicatali) +ldl-2.1.0.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
2.1.0 ~
2.0.4
2.0.3-r1
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sci-libs/libbufr

ECMWF BUFR library - includes both C and Fortran example utilities

18 Oct 2012; Justin Lecher (jlec) libbufr-000360.ebuild,
libbufr-000387.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
000387
000360
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sci-libs/libcmatrix

lite version of pNMRsim

20 May 2013; Justin Lecher (jlec) libcmatrix-3.11.0.ebuild:
Change license to a-r-r and RESTRICT=mirror, #465594
amd64-fbsdsparc-fbsdx86-fbsd
3.11.0
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sci-libs/libcore

Robust numerical and geometric computation library

03 Aug 2012; Sébastien Fabbro (bicatali) libcore-2.1.1-r1.ebuild:
Keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
2.1.1-r1
2.0.8
1.8
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sci-libs/libctl

Guile-based library for scientific simulations

18 Oct 2012; Justin Lecher (jlec) libctl-3.1.ebuild,
libctl-3.2.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
3.2
3.1
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sci-libs/libdap

Implementation of a C++ SDK for DAP 2.0 and 3.2

03 Aug 2012; Sébastien Fabbro (bicatali) libdap-3.11.3.ebuild,
metadata.xml:
Keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
3.11.3
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sci-libs/libecwj2

Library for both the ECW and the ISO JPEG 2000 image file formats

03 Aug 2012; Sébastien Fabbro (bicatali) libecwj2-3.3-r1.ebuild:
Added static-libs, keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
3.3-r1
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sci-libs/libexcelformat

reading, writing, and editing of XLS (BIFF8 format) files using C++

18 Oct 2010; Justin Lecher (jlec) libexcelformat-101016.ebuild:
Keywoprded ~-linux prefix
amd64-fbsdsparc-fbsdx86-fbsd
101016
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sci-libs/libgenome

Library for sci-biology/mauve

*libgenome-1.3-r1 (05 Dec 2009)
05 Dec 2009; Andrey Kislyuk (weaver) -libgenome-1.3.ebuild,
+libgenome-1.3-r1.ebuild:
Version bump (upstream did not bump displayed version)
amd64-fbsdsparc-fbsdx86-fbsd
9999
1.3-r1
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sci-libs/libgeotiff

Library for reading TIFF files with embedded tags for geographic (cartographic) information

29 Jul 2012; Raúl Porcel (armin76) libgeotiff-1.2.4.ebuild,
libgeotiff-1.3.0.ebuild, libgeotiff-1.4.0.ebuild:
Drop alpha/sparc keywords
amd64-fbsdsparc-fbsdx86-fbsd
1.4.0
1.3.0
1.2.4
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sci-libs/libghemical

Chemical quantum mechanics and molecular mechanics

*libghemical-3.0.0 (02 Feb 2013)
02 Feb 2013; Patrick Lauer (patrick) +libghemical-3.0.0.ebuild:
Bump
amd64-fbsdsparc-fbsdx86-fbsd
3.0.0
2.99.1
2.00
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sci-libs/libh2o

Library of routines for IF97 water & steam properties

*libh2o-9999 (15 Dec 2012)
15 Dec 2012; Michał Górny (mgorny) +libh2o-9999.ebuild:
Import the live ebuild.
amd64-fbsdsparc-fbsdx86-fbsd
9999
0.2.1
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sci-libs/libh2oxx

C++ bindings for libh2o

*libh2oxx-9999 (15 Dec 2012)
15 Dec 2012; Michał Górny (mgorny) +libh2oxx-9999.ebuild:
Import the live ebuild.
amd64-fbsdsparc-fbsdx86-fbsd
9999
0.2
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sci-libs/libint

Matrix elements (integrals) evaluation over Cartesian Gaussian functions

18 Oct 2012; Justin Lecher (jlec) libint-1.1.2.ebuild,
libint-1.1.4-r1.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
1.1.4-r1
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sci-libs/libmems

Library for sci-biology/mauve

08 Jan 2013; Kacper Kowalik (xarthisius) libmems-1.6_p1.ebuild:
Fix SRC_URI
amd64-fbsdsparc-fbsdx86-fbsd
9999
1.6_p1
1.6
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sci-libs/libmuscle

Library for sci-biology/mauve

*libmuscle-3.7-r2 (28 Jun 2010)
28 Jun 2010; Justin Lecher (jlec)
+files/3.7-bufferoverflow.patch, +libmuscle-3.7-r2.ebuild:
Fix for bufferoverflow, #309341
amd64-fbsdsparc-fbsdx86-fbsd
9999
3.7-r2
3.7-r1
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sci-libs/libnova

Celestial Mechanics and Astronomical Calculation Library

06 Jan 2013; Sébastien Fabbro (bicatali) libnova-0.15.0.ebuild:
fixed for doc building, bug #450542
amd64-fbsdsparc-fbsdx86-fbsd
0.15.0
0.14.0
0.12.3
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sci-libs/liborigin

Library for reading OriginLab OPJ project files

02 Mar 2013; Markos Chandras (hwoarang) liborigin-20100903.ebuild,
liborigin-20110323.ebuild, liborigin-20110829.ebuild:
Move Qt dependencies to the new category
amd64-fbsdsparc-fbsdx86-fbsd
20110829
20110323
20100903
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sci-libs/libpdb

PDB Record I/O Libraries -- c version

*libpdb-991112-r1 (18 Oct 2012)
18 Oct 2012; Justin Lecher (jlec) libpdb-991112.ebuild,
+libpdb-991112-r1.ebuild, +files/libpdb-991112-dynlib+flags.patch,
metadata.xml:
Straighten ebuild by cleaning the buildsystem
amd64-fbsdsparc-fbsdx86-fbsd
991112-r1
991112
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sci-libs/libpdb++

PDB Record I/O Libraries -- c++ version

18 Oct 2012; Justin Lecher (jlec) libpdb++-040728-r1.ebuild,
files/libpdb++-040728-dynlib+flags.patch:
Fix silent errors
amd64-fbsdsparc-fbsdx86-fbsd
040728-r1
040728
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sci-libs/libqalculate

A modern multi-purpose calculator library

25 May 2013; Agostino Sarubbo (ago) libqalculate-0.9.7-r1.ebuild:
Stable for alpha, wrt bug #450906
amd64-fbsdsparc-fbsdx86-fbsd
0.9.7-r1
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sci-libs/libspatialindex

*libspatialindex-1.8.0 (11 Feb 2013)
11 Feb 2013; Julian Ospald (hasufell)
+libspatialindex-1.8.0.ebuild, +files/libspatialindex-1.8.0-QA.patch,
+metadata.xml:
initial import wrt #413367
amd64-fbsdsparc-fbsdx86-fbsd
1.8.0
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sci-libs/libsvm

Library for Support Vector Machines

*libsvm-3.14 (29 Nov 2012)
29 Nov 2012; Sébastien Fabbro (bicatali)
+files/3.14-makefile.patch, +libsvm-3.14.ebuild, metadata.xml:
Version bump, update patch
amd64-fbsdsparc-fbsdx86-fbsd
3.14
3.12
2.90-r1
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sci-libs/libticables2

*libticables2-1.3.3-r1 (24 Jan 2013)
24 Jan 2013; Justin Lecher (jlec) -libticables2-1.3.3.ebuild,
+libticables2-1.3.3-r1.ebuild:
We need enable-libusb and enable-libusb10 for usb support; debugging support
added
amd64-fbsdsparc-fbsdx86-fbsd
1.3.3-r1
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sci-libs/libticalcs2

Library for communication with TI calculators

04 Aug 2012; Sébastien Fabbro (bicatali) -libticalcs2-1.1.5.ebuild,
libticalcs2-1.1.7.ebuild:
keyword amd64-linux, x86-linux, removed old
amd64-fbsdsparc-fbsdx86-fbsd
1.1.7
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sci-libs/libticonv

Charset conversion library for TI calculators

04 Aug 2012; Sébastien Fabbro (bicatali) -libticonv-1.1.1.ebuild,
libticonv-1.1.3.ebuild:
keyword amd64-linux, x86-linux, removed old
amd64-fbsdsparc-fbsdx86-fbsd
1.1.3
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sci-libs/libtifiles2

Library for TI calculator files

04 Aug 2012; Sébastien Fabbro (bicatali) -libtifiles2-1.1.3.ebuild,
libtifiles2-1.1.5.ebuild:
keyword amd64-linux, x86-linux, removed old
amd64-fbsdsparc-fbsdx86-fbsd
1.1.5
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sci-libs/linux-gpib

Kernel module and driver library for GPIB (IEEE 488.2) hardware

27 May 2013; Andreas K. Huettel (dilfridge)
linux-gpib-3.2.17-r1.ebuild:
Builds fine on arm, adding keyword
amd64-fbsdsparc-fbsdx86-fbsd
3.2.17-r1
3.2.17
3.2.16-r4
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sci-libs/lis

*lis-1.3.32 (05 Mar 2013)
05 Mar 2013; Sébastien Fabbro (bicatali) +lis-1.3.32.ebuild,
-files/lis-1.2.62-autotools.patch, -lis-1.2.120.ebuild, -lis-1.3.30.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
1.3.32
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sci-libs/lrslib

self-contained ANSI C implementation of the reverse search algorithm

24 Mar 2012; Pawel Hajdan jr (phajdan.jr) lrslib-042c-r2.ebuild:
x86 stable wrt bug #408085
amd64-fbsdsparc-fbsdx86-fbsd
042c-r2
042c-r1
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sci-libs/mathgl

*mathgl-1.11.2 (26 Mar 2013)
26 Mar 2013; Sébastien Fabbro (bicatali)
+files/mathgl-1.10.2-gcc43.patch, +files/mathgl-1.11.2-cast.patch,
+files/mathgl-1.11.2-zlib.patch, +files/mathgl-octave-3.4.patch,
+mathgl-1.11.2.ebuild:
Re-added older version to satisfy old udav
amd64-fbsdsparc-fbsdx86-fbsd
2.1.2
2.0.3
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sci-libs/matio

22 Mar 2013; Andrey Grozin (grozin) matio-1.5.1.ebuild:
Fixed docs installation
amd64-fbsdsparc-fbsdx86-fbsd
1.5.1
1.5.0
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sci-libs/mc

2D/3D AFEM code for nonlinear geometric PDE

16 Oct 2012; Justin Lecher (jlec) -mc-1.4.ebuild, mc-1.5.ebuild:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
1.5
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sci-libs/mccp4

Mini-CCP4 library including mtz and map I/O

08 Apr 2008; Donnie Berkholz (dberkholz) ;
+files/0.7.1-add-amd64-support.patch, mccp4-0.7.1.ebuild:
(#176860) Fix amd64 build (Justin T. Riley), keyword ~amd64.
amd64-fbsdsparc-fbsdx86-fbsd
0.7.1
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sci-libs/metis

A package for unstructured serial graph partitioning

16 Oct 2012; Justin Lecher (jlec) metis-4.0.1-r1.ebuild,
metis-4.0.3.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
4.0.3 ~ ~
4.0.1-r1
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sci-libs/minfx

Numerical optimisation library

*minfx-1.0.4 (13 May 2013)
13 May 2013; Justin Lecher (jlec) +minfx-1.0.4.ebuild:
Version Bump
amd64-fbsdsparc-fbsdx86-fbsd
1.0.4
1.0.4_pre98
1.0.3-r1
1.0.3
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sci-libs/minuit

A C++ physics analysis tool for function minimization

*minuit-5.28.00 (07 Mar 2011)
07 Mar 2011; Sébastien Fabbro (bicatali) -minuit-5.27.02.ebuild,
+minuit-5.28.00.ebuild:
Version bump. Added static-libs flag.
amd64-fbsdsparc-fbsdx86-fbsd
5.28.00
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sci-libs/mkl

Intel(R) Math Kernel Library: linear algebra, fft, math functions

28 Feb 2013; Jeroen Roovers (jer) mkl-10.0.5.025.ebuild:
check_reqs_pkg_setup -> check-reqs_pkg_setup by julgo (bug #459706).
amd64-fbsdsparc-fbsdx86-fbsd
10.0.5.025
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sci-libs/mmdb

The Coordinate Library, designed to assist CCP4 developers in working with coordinate files

06 Dec 2012; Pawel Hajdan jr (phajdan.jr) mmdb-1.24.ebuild:
x86 stable wrt bug #445102
amd64-fbsdsparc-fbsdx86-fbsd
1.24
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sci-libs/mmtk

Molecular Modeling ToolKit for Python

*mmtk-2.7.9 (16 Jun 2013)
16 Jun 2013; Justin Lecher (jlec) +mmtk-2.7.9.ebuild,
metadata.xml:
Version Bump and bump to distutils-r1.eclass
amd64-fbsdsparc-fbsdx86-fbsd
2.7.9
2.7.5
2.7.3
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sci-libs/monomer-db

Monomer library used for macromolecular structure building and refinement

21 Nov 2011; Justin Lecher (jlec) monomer-db-5.32.ebuild:
keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123
amd64-fbsdsparc-fbsdx86-fbsd
0.090729
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sci-libs/mpfi

Multiple precision interval arithmetic library based on MPFR

*mpfi-1.5.1 (06 Feb 2012)
06 Feb 2012; Sébastien Fabbro (bicatali) +mpfi-1.5.1.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
1.5.1
1.5
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sci-libs/mpir

Library for arbitrary precision integer arithmetic (fork of gmp)

*mpir-2.6.0-r2 (22 May 2013)
22 May 2013; Thomas Kahle (tomka) +files/mpir-2.6.0-gcc48.patch,
+mpir-2.6.0-r2.ebuild:
fix tests with gcc-4.8 (bug 470838)
amd64-fbsdsparc-fbsdx86-fbsd
2.6.0-r2
2.6.0-r1
2.6.0
2.5.1
2.2.1
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sci-libs/naga

Simplified Java NIO asynchronous sockets

18 Jun 2012; Jeff Gardner (je_fro) naga-2.1.ebuild:
Making snapshot of svn sources.
amd64-fbsdsparc-fbsdx86-fbsd
2.1
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sci-libs/neartree

Function library efficiently solving the Nearest Neighbor Problem(known as the post office problem)

04 Dec 2012;(ago) neartree-3.1.1-r3.ebuild:
Stable for x86, wrt bug #440372
amd64-fbsdsparc-fbsdx86-fbsd
3.1.1-r3
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sci-libs/nemesis

Enhancement to the EXODUSII finite element database model

*nemesis-5.22b (13 Dec 2012)
13 Dec 2012; Justin Lecher (jlec) +nemesis-5.22b.ebuild,
+files/nemesis-5.22b-multilib.patch, +metadata.xml:
New addition
amd64-fbsdsparc-fbsdx86-fbsd
5.22b
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sci-libs/netcdf

Scientific library and interface for array oriented data access

17 Dec 2012; Agostino Sarubbo (ago) netcdf-4.2.1.1.ebuild:
Add ~ppc64, wrt bug #435904
amd64-fbsdsparc-fbsdx86-fbsd
4.2.1.1
4.2.1
4.2
4.1.3
4.1.1-r4
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sci-libs/netcdf-cxx

C++ library for netCDF

*netcdf-cxx-4.2-r1 (10 Jan 2013)
10 Jan 2013; Sébastien Fabbro (bicatali)
+files/netcdf-cxx-4.2-config.patch, +netcdf-cxx-4.2-r1.ebuild,
-netcdf-cxx-4.2.ebuild:
Fixed pkg-config file and ncxx4-config script to include netcdf C libraries
for as-needed problems
amd64-fbsdsparc-fbsdx86-fbsd
4.2-r1
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sci-libs/netcdf-fortran

Scientific library and interface for array oriented data access

16 Oct 2012; Justin Lecher (jlec) netcdf-fortran-4.2.ebuild:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
4.2
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sci-libs/nfft

library for nonequispaced discrete Fourier transformations

*nfft-3.2.3 (06 May 2013)
06 May 2013; Christoph Junghans (ottxor) +metadata.xml,
+nfft-3.2.3.ebuild:
initial import from sci overlay
amd64-fbsdsparc-fbsdx86-fbsd
3.2.3
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sci-libs/nlopt

Non-linear optimization library

24 Apr 2013; Justin Lecher (jlec) nlopt-2.2.4.ebuild,
nlopt-2.3-r1.ebuild, nlopt-2.3-r2.ebuild, metadata.xml:
Fix deprecated macro usage, #466988
amd64-fbsdsparc-fbsdx86-fbsd
2.3-r2
2.3-r1
2.2.4
sci-libs Homepage LGPL-2.1 MIT ChangeLog Metadata Similar Bugs Forums

sci-libs/oc

Network Data Access Protocol client C library

08 Jan 2013; Sébastien Fabbro (bicatali) -oc-1.0.ebuild,
oc-2.0.ebuild:
Fixed doc install, bug #450860
amd64-fbsdsparc-fbsdx86-fbsd
2.0
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sci-libs/ogdi

Open Geographical Datastore Interface, a GIS support library

27 Feb 2013; Jeroen Roovers (jer) ogdi-3.1.5-r1.ebuild,
ogdi-3.1.6.ebuild, ogdi-3.2.0_beta2.ebuild:
Drop HPPA keywording.
amd64-fbsdsparc-fbsdx86-fbsd
3.2.0_beta2
3.1.6
3.1.5-r1
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sci-libs/opencascade

Software development platform for CAD/CAE, 3D surface/solid modeling and data exchange

27 Apr 2013; Michael Weber (xmw) -opencascade-6.5.4.ebuild,
opencascade-6.5.5.ebuild:
Adding ~amd64 ~x86 keywords, drop 6.5.4.
amd64-fbsdsparc-fbsdx86-fbsd
6.5.5
6.5.0
6.5
sci-libs Homepage Open-CASCADE-Technology-Public-License-6.5 ChangeLog Metadata Similar Bugs Forums

sci-libs/openfoam

Open Field Operation and Manipulation - CFD Simulation Toolbox

15 May 2013; Patrick Lauer (patrick) metadata.xml,
openfoam-2.2.0.ebuild:
Make opendx dependency optional #469754
amd64-fbsdsparc-fbsdx86-fbsd
2.2.0
2.1.1-r1
2.1.1
2.1.0
1.7.1
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sci-libs/openfoam-bin

Open Field Operation and Manipulation - CFD Simulation Toolbox

10 Feb 2013; Pacho Ramos (pacho) openfoam-bin-1.6.ebuild:
paraview will be dropped from main tree, bug #424659
amd64-fbsdsparc-fbsdx86-fbsd
1.6
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sci-libs/openmm

provides tools for modern molecular modeling simulation

*openmm-5.1 (22 May 2013)
22 May 2013; Christoph Junghans (ottxor) +openmm-5.1.ebuild:
version bump
amd64-fbsdsparc-fbsdx86-fbsd
5.1
5.0.1
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sci-libs/parmetis

Parallel graph partitioner

03 Aug 2012; Sébastien Fabbro (bicatali) parmetis-3.2.0.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
3.2.0
3.1.1
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sci-libs/parmgridgen

Software for parallel (mpi) generating coarse grids

21 Jul 2009; Christian Faulhammer (fauli)
parmgridgen-1.0.ebuild, +files/parmgridgen-1.0-as-needed.patch:
add patch for forced --as-needed linker flag (bug 272653), patch provided
by Priit Laes <amd@astore20.com> in bug 232491
Ported to EAPI 2
amd64-fbsdsparc-fbsdx86-fbsd
1.0
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sci-libs/pgplot

FORTRAN/C device-independent scientific graphic library

*pgplot-5.2.2-r6 (20 Feb 2013)
20 Feb 2013; Sébastien Fabbro (bicatali) +pgplot-5.2.2-r6.ebuild,
-pgplot-5.2.2-r5.ebuild:
Add fonts in the path to avoid pgplot errors in other programs
amd64-fbsdsparc-fbsdx86-fbsd
5.2.2-r6
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sci-libs/plotmm

Plot widget for GTKmm

04 May 2012; Jeff Horelick (jdhore) plotmm-0.1.2.ebuild:
dev-util/pkgconfig -> virtual/pkgconfig
amd64-fbsdsparc-fbsdx86-fbsd
0.1.2
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sci-libs/plplot

Multi-language scientific plotting library

*plplot-5.9.9-r2 (18 Apr 2013)
18 Apr 2013; Patrick Lauer (patrick) +plplot-5.9.9-r2.ebuild:
Fix sanbox violation #464144
amd64-fbsdsparc-fbsdx86-fbsd
5.9.9-r2
5.9.9-r1
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sci-libs/primegen

Small, fast library to generate primes in order

03 Aug 2012; Sébastien Fabbro (bicatali) primegen-0.97-r1.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
0.97-r1
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sci-libs/profnet

Neural network architecture for profacc

*profnet-1.0.22 (24 Apr 2013)
24 Apr 2013; Justin Lecher (jlec) +profnet-1.0.22.ebuild,
+metadata.xml:
New addition
amd64-fbsdsparc-fbsdx86-fbsd
1.0.22
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sci-libs/profphd-utils

Additional utils for profphd

25 Apr 2013; Justin Lecher (jlec) profphd-utils-1.0.10.ebuild:
Give it some prefix love
amd64-fbsdsparc-fbsdx86-fbsd
1.0.10
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sci-libs/proj

Proj.4 cartographic projection software with updated NAD27 grids

20 Feb 2013; Agostino Sarubbo (ago) proj-4.8.0.ebuild:
Stable for s390, wrt bug #417453
amd64-fbsdsparc-fbsdx86-fbsd
4.8.0
4.7.0
sci-libs Homepage MIT ChangeLog Metadata Similar Bugs Forums

sci-libs/punc

Portable Understructure for Numerical Computing

27 Feb 2013; Justin Lecher (jlec) punc-1.5.ebuild:
Detect superlu via pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
1.5
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sci-libs/pycifrw

Provides support for reading and writing of CIF using python

25 Feb 2012; Patrick Lauer (patrick) pycifrw-3.3-r1.ebuild:
Restricting pypy and jython
amd64-fbsdsparc-fbsdx86-fbsd
3.3-r1
sci-libs Homepage ASRP ChangeLog Metadata Similar Bugs Forums

sci-libs/pymmlib

Toolkit and library for the analysis and manipulation of macromolecular structural models

14 May 2012; Justin Lecher (jlec) pymmlib-1.2.0.ebuild:
Keyworded for ~-linux, tested by me
amd64-fbsdsparc-fbsdx86-fbsd
1.2.0
1.0.0-r1
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sci-libs/qd

Quad-double and double-double float arithmetics

*qd-2.3.14 (31 May 2013)
31 May 2013; Justin Lecher (jlec) +qd-2.3.14.ebuild, metadata.xml:
Version Bump
amd64-fbsdsparc-fbsdx86-fbsd
2.3.14
2.3.13
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/qfits

ESO stand-alone C library offering easy access to FITS files

03 Aug 2012; Sébastien Fabbro (bicatali) qfits-6.2.0.ebuild:
Switched to autotools-utils, EAPI 4
amd64-fbsdsparc-fbsdx86-fbsd
6.2.0
sci-libs Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/qrupdate

Library for updating of QR and Cholesky decompositions

21 Feb 2013; Justin Lecher (jlec) qrupdate-1.1.0.ebuild,
qrupdate-1.1.1.ebuild, qrupdate-1.1.2.ebuild, metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
1.1.2 ~
1.1.1
1.1.0
sci-libs Homepage GPL-3 ChangeLog Metadata Similar Bugs Forums

sci-libs/rosetta-db

*rosetta-db-3.4 (19 Mar 2013)
19 Mar 2013; Justin Lecher (jlec) +rosetta-db-3.4.ebuild,
metadata.xml:
Version Bump
amd64-fbsdsparc-fbsdx86-fbsd
3.4
3.1
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/rosetta-fragments

Fragment library for rosetta

*rosetta-fragments-3.1-r1 (25 Apr 2013)
25 Apr 2013; Justin Lecher (jlec) rosetta-fragments-3.1.ebuild,
+rosetta-fragments-3.1-r1.ebuild,
+files/rosetta-fragments-3.1-chemshift.patch,
+files/rosetta-fragments-3.1-nnmake.patch:
Bump to EAPI=5 and straighten several issues
amd64-fbsdsparc-fbsdx86-fbsd
3.1-r1
3.1
sci-libs Homepage rosetta ChangeLog Metadata Similar Bugs Forums

sci-libs/scikits

Common files for python scikits

04 Jun 2013; Justin Lecher (jlec) scikits-0.1-r1.ebuild:
Fix for correct usage of new python eclasses
amd64-fbsdsparc-fbsdx86-fbsd
0.1-r1
0.1
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/scikits_image

Image processing routines for SciPy

18 Jun 2013; Patrick Lauer (patrick) scikits_image-0.8.2.ebuild:
Fix python targets as pyamg does not have py3 support yet
amd64-fbsdsparc-fbsdx86-fbsd
0.8.2
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/scikits_learn

Python modules for machine learning and data mining

15 May 2013; Justin Lecher (jlec) scikits_learn-0.13.1.ebuild,
metadata.xml:
Drop parallel build, has problem here
amd64-fbsdsparc-fbsdx86-fbsd
0.13.1
0.13-r1
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/scikits_optimization

Python module for numerical optimization

*scikits_optimization-0.3 (13 May 2013)
13 May 2013; Justin Lecher (jlec)
+scikits_optimization-0.3.ebuild:
Version Bump
amd64-fbsdsparc-fbsdx86-fbsd
0.3
0.2-r1
0.2
0.1
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/scikits_statsmodels

18 Feb 2013; Sébastien Fabbro (bicatali)
scikits_statsmodels-0.4.3-r1.ebuild:
Removed double prefix'ed
amd64-fbsdsparc-fbsdx86-fbsd
0.4.3-r1
0.4.3
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/scikits_timeseries

*scikits_timeseries-0.91.3-r1 (09 Feb 2013)
09 Feb 2013; Justin Lecher (jlec)
+scikits_timeseries-0.91.3-r1.ebuild, metadata.xml:
Move to new python eclasses
amd64-fbsdsparc-fbsdx86-fbsd
0.91.3-r1
0.91.3
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/scipy

Scientific algorithms library for Python

17 Jun 2013; Sébastien Fabbro (bicatali)
-files/scipy-0.11.0-test_basic.patch, -scipy-0.11.0-r1.ebuild, metadata.xml,
scipy-0.9.0-r1.ebuild:
Change umfpack flag to sparse for consistency
amd64-fbsdsparc-fbsdx86-fbsd
0.12.0
0.9.0-r1
sci-libs Homepage BSD LGPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/scotch

Software for graph, mesh and hypergraph partitioning

13 Jun 2013; Justin Bronder (jsbronder) scotch-6.0.0.ebuild:
Don't let openmpi override malloc, works around sandbox issue in #462602
amd64-fbsdsparc-fbsdx86-fbsd
6.0.0
5.1.12b
sci-libs Homepage CeCILL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/shapelib

Library for manipulating ESRI Shapefiles

23 Dec 2012; Markus Meier (maekke) shapelib-1.3.0-r1.ebuild:
add ~arm
amd64-fbsdsparc-fbsdx86-fbsd
1.3.0-r1 ~
sci-libs Homepage GPL-2 LGPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/shogun

04 Mar 2013; Sébastien Fabbro (bicatali)
files/shogun-1.1.0-respect-ldflags.patch, shogun-2.0.0.ebuild:
Force linking with threads in every case
amd64-fbsdsparc-fbsdx86-fbsd
2.0.0
1.1.0
sci-libs Homepages: ChangeLog Metadata Similar Bugs Forums

sci-libs/spooles

SParse Object Oriented Linear Equations Solver

03 Aug 2012; Sébastien Fabbro (bicatali) spooles-2.2.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
2.2
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sci-libs/spqr

Multithreaded multifrontal sparse QR factorization library

23 Nov 2012; Sébastien Fabbro (bicatali) spqr-1.3.1.ebuild:
SImplified dependencies
amd64-fbsdsparc-fbsdx86-fbsd
1.3.1
1.2.3
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sci-libs/spr

Statistical analysis and machine learning library

03 Aug 2012; Sébastien Fabbro (bicatali) spr-3.3.2.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
3.3.2
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sci-libs/ssm

A macromolecular coordinate superposition library

21 May 2012; Brent Baude (ranger) ssm-1.1.ebuild:
Marking ssm-1.1 ppc for bug 413815
amd64-fbsdsparc-fbsdx86-fbsd
1.1
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/starparse

Library for parsing NMR star files (peak-list format) and CIF files

26 Jul 2012; Justin Lecher (jlec) starparse-1.0-r1.ebuild:
Bump EAPI to4, use autotools-utils.eclass, handle static-libs
amd64-fbsdsparc-fbsdx86-fbsd
1.0-r1
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sci-libs/suitesparse

08 Jan 2013; Sébastien Fabbro (bicatali) suitesparse-4.0.2.ebuild:
Changed flag from supernodal to lapack to match cholmod, bug #450726
amd64-fbsdsparc-fbsdx86-fbsd
4.0.2
3.7.0
3.6.0
3.5.0
3.4.0
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sci-libs/suitesparseconfig

Common configurations for all packages in suitesparse

08 Dec 2012; Markus Meier (maekke) suitesparseconfig-4.0.2.ebuild:
add ~arm, bug #440908
amd64-fbsdsparc-fbsdx86-fbsd
4.0.2 ~
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/superlu

Sparse LU factorization library

21 Feb 2013; Justin Lecher (jlec) superlu-4.1-r1.ebuild:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
4.3
4.1-r1
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/szip

Extended-Rice lossless compression algorithm implementation

15 Oct 2012;(naota) szip-2.1-r1.ebuild:
Add ~x86-fbsd.
amd64-fbsdsparc-fbsdx86-fbsd
2.1-r1 ~
2.1
sci-libs Homepage szip ChangeLog Metadata Similar Bugs Forums

sci-libs/ta-lib

Technical Analysis Library for analyzing financial markets trends

26 Apr 2012; Justin Lecher (jlec) ta-lib-0.4.0.ebuild,
files/ta-lib-0.4.0-asneeded.patch, metadata.xml:
Move to EAPI=4, handle static-libs, use autotools-utils.eclass
amd64-fbsdsparc-fbsdx86-fbsd
0.4.0
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/tamu_anova

ANOVA Extensions to the GNU Scientific Library

17 Apr 2013; Justin Lecher (jlec) tamu_anova-0.2.1.ebuild,
+files/tamu_anova-0.2.1-texinfo5.1.patch, metadata.xml:
Add compatibility patch with sys-apps/texinfo-5.1, #464516
amd64-fbsdsparc-fbsdx86-fbsd
0.2.1
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sci-libs/taucs

C library of sparse linear solvers

21 Feb 2013; Justin Lecher (jlec) taucs-2.2.ebuild, metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
2.2
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/tnt

Template Numerical Toolkit: C++ headers for array and matrices

03 Aug 2012; Sébastien Fabbro (bicatali) tnt-1.2.6.ebuild,
tnt-3.0.12.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
3.0.12
1.2.6
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sci-libs/torch

Machine-learning library, written in simple C++

03 Aug 2012; Sébastien Fabbro (bicatali) metadata.xml,
torch-3.1.ebuild:
keyword amd64-linux x86-linux
amd64-fbsdsparc-fbsdx86-fbsd
3.1
3
sci-libs Homepage BSD ChangeLog Metadata Similar Bugs Forums

sci-libs/udunits

Library for manipulating units of physical quantities

16 Oct 2012; Justin Lecher (jlec) udunits-2.1.15.ebuild,
udunits-2.1.24.ebuild, metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
2.1.24
2.1.15
sci-libs Homepage UCAR-Unidata ChangeLog Metadata Similar Bugs Forums

sci-libs/ufconfig

Common configuration scripts for the SuiteSparse libraries

15 Oct 2012;(naota) ufconfig-3.7.1.ebuild:
Add ~x86-fbsd.
amd64-fbsdsparc-fbsdx86-fbsd
3.7.1 ~ ~
3.7.0 ~
3.6.1
3.6.0
3.5.0
3.1.0
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

sci-libs/umfpack

Unsymmetric multifrontal sparse LU factorization library

21 Feb 2013; Justin Lecher (jlec) umfpack-5.2.0.ebuild,
umfpack-5.5.2.ebuild, umfpack-5.6.1-r1.ebuild, metadata.xml:
Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config
amd64-fbsdsparc-fbsdx86-fbsd
5.6.1-r1 ~ ~
5.5.2 ~ ~
5.2.0
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sci-libs/vecmath-objectclub

Unofficial free implementation of Sun javax.vecmath by Kenji Hiranabe

14 Dec 2012; Ulrich Müller (ulm) vecmath-objectclub-1.14.ebuild:
Update LICENSE, HPND according to notices in source files.
amd64-fbsdsparc-fbsdx86-fbsd
1.14
sci-libs Homepage HPND ChangeLog Metadata Similar Bugs Forums

sci-libs/votca-tools

Votca tools library

*votca-tools-1.2.3-r3 (14 Apr 2013)
14 Apr 2013; Christoph Junghans (ottxor)
+votca-tools-1.2.3-r3.ebuild, -votca-tools-1.2.3-r2.ebuild:
added subslot deps
amd64-fbsdsparc-fbsdx86-fbsd
1.2.3-r3
1.2.2
sci-libs Homepage Apache-2.0 ChangeLog Metadata Similar Bugs Forums

sci-libs/vtk

The Visualization Toolkit

05 Jun 2013; Luca Barbato (lu_zero) vtk-5.10.1.ebuild,
+files/vtk-5.10.1-libav-9.patch:
libav 9 (and upcoming 10) support.
amd64-fbsdsparc-fbsdx86-fbsd
5.10.1
5.10.0
sci-libs Homepage BSD LGPL-2 ChangeLog Metadata Similar Bugs Forums

sci-libs/xgks-pmel

PMEL fork of XGKS, an X11-based version of the ANSI Graphical Kernel System.

16 Oct 2012; Justin Lecher (jlec) xgks-pmel-2.5.5.ebuild,
metadata.xml:
Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
updated fortran-2.eclass
amd64-fbsdsparc-fbsdx86-fbsd
2.5.5
sci-libs Homepage UCAR-Unidata ChangeLog Metadata Similar Bugs Forums

sci-libs/xylib

Experimental x-y data reading library

*xylib-1.1 (18 Dec 2012)
18 Dec 2012; Sébastien Fabbro (bicatali) +xylib-1.1.ebuild,
-xylib-0.8.ebuild:
Version bump
amd64-fbsdsparc-fbsdx86-fbsd
1.1
1.0
sci-libs Homepage LGPL-2.1 ChangeLog Metadata Similar Bugs Forums

Last update:
19 Jun 2013
08:56 UTC

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