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sci-biology/vienna-rna

The Vienna RNA Package - RNA secondary structure prediction and comparison

*vienna-rna-1.7.2 (28 Aug 2008)
28 Aug 2008; Markus Dittrich (markusle)
+files/vienna-rna-1.7.2-gcc4.3.patch, -vienna-rna-1.6.1.ebuild,
-vienna-rna-1.6.5.ebuild, +vienna-rna-1.7.2.ebuild:
Version bump and removed old ebuilds (fixes bug #235943). Thanks much to
Chad A. Simmons <chad.simmons@member.fsf.org> for his ebuild and patches.
alphaamd64hppaia64ppcppc64sparcx86
1.7.2 ~ ~ ~
1.7.0 ~ ~ ~
1.4 ~ +
sci-biology Homepage vienna-rna ChangeLog Metadata Similar Bugs Forums

sci-biology/clustalx

Graphical interface for the ClustalW multiple alignment program

*clustalx-2.0.9 (28 Aug 2008)
28 Aug 2008; Olivier Fisette (ribosome) +clustalx-2.0.9.ebuild:
New upstream version (complete rewrite based on Qt).
alphaamd64hppaia64ppcppc64sparcx86
2.0.9 ~
1.83-r2 + ~ +
sci-biology Homepage clustalw ChangeLog Metadata Similar Bugs Forums

sci-biology/clustalw

General purpose multiple alignment program for DNA and proteins

*clustalw-2.0.9 (28 Aug 2008)
28 Aug 2008; Olivier Fisette (ribosome) +clustalw-2.0.9.ebuild:
New upstream major version (complete rewrite, removing keywords). Slotted
to cohexist with version 1.x.
alphaamd64hppaia64ppcppc64sparcx86
2.0.9 ~
1.83-r2 + + + + + +
sci-biology Homepage clustalw ChangeLog Metadata Similar Bugs Forums

sci-biology/emboss

The European Molecular Biology Open Software Suite - A sequence analysis package

27 Aug 2008; Olivier Fisette (ribosome) emboss-4.0.0.ebuild:
Depend on ClustalW 1.83 since version 2.x will soon be added to Portage
and is incompatible with EMBOSS wrapper programs.
alphaamd64hppaia64ppcppc64sparcx86
6.0.1 ~ ~ ~ ~ ~
4.0.0 + + + ~ +
sci-biology Homepage GPL-2 LGPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/embassy

A meta-package for installing all EMBASSY packages (EMBOSS add-ons)

27 Aug 2008; Olivier Fisette (ribosome) -embassy-5.0.0.ebuild:
Pruning version that will never be stabilised.
alphaamd64hppaia64ppcppc64sparcx86
6.0.1 ~ ~ ~ ~
4.0.0 ~ + ~ +
sci-biology Homepage GPL-2 freedist ChangeLog Metadata Similar Bugs Forums

sci-biology/embassy-hmmer

EMBOSS wrappers for HMMER - Biological sequence analysis with profile HMMs

27 Aug 2008; Olivier Fisette (ribosome)
embassy-hmmer-2.3.2-r1.ebuild, embassy-hmmer-2.3.2-r2.ebuild:
Fixed description. Added dependency on HMMER.
alphaamd64hppaia64ppcppc64sparcx86
2.3.2-r2 ~ ~ ~ ~
2.3.2 ~ + ~ +
sci-biology Homepage LGPL-2 GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/embassy-memenew

EMBOSS wrappers for MEME - Multiple Em for Motif Elicitation

27 Aug 2008; Olivier Fisette (ribosome)
embassy-memenew-0.1.0.ebuild, embassy-memenew-0.1.0-r1.ebuild:
Fixed description.
alphaamd64hppaia64ppcppc64sparcx86
0.1.0-r1 ~ ~ ~ ~
0.1.0 ~ + ~ +
sci-biology Homepage LGPL-2 GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/embassy-iprscan

InterProScan motif detection add-on package for EMBOSS

*embassy-iprscan-4.3.1 (27 Aug 2008)
27 Aug 2008; Olivier Fisette (ribosome) +metadata.xml,
+embassy-iprscan-4.3.1.ebuild:
Initial import for EMBASSY 6.0.1.
alphaamd64hppaia64ppcppc64sparcx86
4.3.1 ~ ~ ~ ~
sci-biology Homepage LGPL-2 GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/embassy-mira

Fragment assembly add-on package for EMBOSS

*embassy-mira-2.8.2 (27 Aug 2008)
27 Aug 2008; Olivier Fisette (ribosome) +metadata.xml,
+embassy-mira-2.8.2.ebuild:
Initial import for EMBASSY 6.0.1.
alphaamd64hppaia64ppcppc64sparcx86
2.8.2 ~ ~ ~ ~
sci-biology Homepage LGPL-2 GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/embassy-emnu

EMBOSS Menu is Not UNIX - Simple menu of EMBOSS applications

*embassy-emnu-1.05-r5 (27 Aug 2008)
27 Aug 2008; Olivier Fisette (ribosome)
+embassy-emnu-1.05-r5.ebuild:
New upstream version/package for EMBASSY 6.0.1.
alphaamd64hppaia64ppcppc64sparcx86
1.05-r5 ~ ~ ~ ~
1.05-r3 ~ + ~ +
sci-biology Homepage LGPL-2 GPL-2 ChangeLog Metadata Similar Bugs Forums

Last update:
29 Aug 2008
04:12 UTC

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