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sci-biology/stride

Protein secondary structure assignment from atomic coordinates

08 May 2012; Christoph Junghans (ottxor)
stride-20011129-r1.ebuild:
added ~x86-macos keyword
alphaamd64hppaia64ppcppc64sparcx86
20011129-r1 ~ ~ ~
20011129 ~ ~ ~
sci-biology Homepage as-is ChangeLog Metadata Similar Bugs Forums

sci-biology/pilercr

Analysis of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs)

26 Apr 2012; Justin Lecher (jlec) pilercr-1.0.ebuild:
Move to EAPI=, remove unecessary die
alphaamd64hppaia64ppcppc64sparcx86
1.0 + +
sci-biology Homepage public-domain ChangeLog Metadata Similar Bugs Forums

sci-biology/bamtools

A programmer's API and an end-user's toolkit for handling BAM files

26 Apr 2012; Justin Lecher (jlec) bamtools-1.0.2.ebuild:
Remove unnecessary die
alphaamd64hppaia64ppcppc64sparcx86
1.0.2 ~ ~
sci-biology Homepage MIT ChangeLog Metadata Similar Bugs Forums

sci-biology/gibbs

Identify motifs, conserved regions, in DNA or protein sequences

26 Apr 2012; Justin Lecher (jlec) gibbs-3.1.ebuild,
-gibbs-1995.9.ebuild:
Move to EAPI=4, drop old
alphaamd64hppaia64ppcppc64sparcx86
3.1 + +
sci-biology Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/ncbi-tools

Development toolkit and applications for computational biology, including NCBI BLAST

26 Apr 2012; Justin Lecher (jlec) ncbi-tools-20080302.ebuild,
-ncbi-tools-20090809-r2.ebuild:
Dropped old
alphaamd64hppaia64ppcppc64sparcx86
20100808 ~ ~ ~ ~
20090809 ~ + ~ +
20080302 ~ + ~ + ~ +
sci-biology Homepage public-domain ChangeLog Metadata Similar Bugs Forums

sci-biology/mcl

A Markov Cluster Algorithm implementation

26 Apr 2012; Justin Lecher (jlec) mcl-08.312.ebuild, metadata.xml:
Move to EAPI=4
alphaamd64hppaia64ppcppc64sparcx86
08.312 ~ ~
sci-biology Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/tree-puzzle

Maximum likelihood analysis for nucleotide, amino acid, and two-state data

26 Apr 2012; Justin Lecher (jlec) tree-puzzle-5.2.ebuild:
Add missing quotes
alphaamd64hppaia64ppcppc64sparcx86
5.2 ~ ~ +
sci-biology Homepage GPL-2 ChangeLog Metadata Similar Bugs Forums

sci-biology/tophat

A fast splice junction mapper for RNA-Seq reads

25 Apr 2012; Justin Lecher (jlec) tophat-1.0.12.ebuild,
tophat-1.4.1.ebuild, tophat-2.0.0.ebuild:
Drop unnessecary die
alphaamd64hppaia64ppcppc64sparcx86
2.0.0 ~ ~
1.4.1 ~ ~
1.0.12 + +
sci-biology Homepage Artistic ChangeLog Metadata Similar Bugs Forums

sci-biology/ApE

ApE - A Plasmid Editor

25 Apr 2012; Jeff Gardner (je_fro) ApE-2.0.7.ebuild:
Fix SRC_URI thanks to Horea Christian in bug #405367.
alphaamd64hppaia64ppcppc64sparcx86
2.0.7 ~ ~
sci-biology Homepage ApE ChangeLog Metadata Similar Bugs Forums

sci-biology/clustalx

Graphical interface for the ClustalW multiple alignment program

*clustalx-2.1 (22 Apr 2012)
22 Apr 2012; Kacper Kowalik (xarthisius) +clustalx-2.1.ebuild:
Version bump wrt #410163 by Michael (kensington) <gentoo@scribeofthenile.com>
alphaamd64hppaia64ppcppc64sparcx86
2.1 ~ ~
2.0.11 + +
1.83-r2 + ~ +
sci-biology Homepage GPL-3 LGPL-3 ChangeLog Metadata Similar Bugs Forums

Last update:
16 May 2012
11:25 UTC

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