Gentoo Project

Biology Project

Latest Commits

• Commits on 2023-09-11
  • sci-biology/pilercr: update HOMEPAGE, SRC_URI

    d76acba

    Andrew Ammerlaan committed on 2023-09-11 07:37:28 UTC

    sci-biology/pilercr/pilercr-1.0-r3.ebuild
  • sci-biology/pilercr: Fix error: ISO C++17 does not allow register storage class specifier

    40119f3

    Brahmajit Das authored and  Andrew Ammerlaan committed on 2023-09-11 07:37:27 UTC

    sci-biology/pilercr/files/pilercr-1.0-drop-registers.patch sci-biology/pilercr/pilercr-1.0-r3.ebuild
• Commits on 2023-09-07
  • sci-biology/elph: Fix C++17 does not allow register storage class

    763cc65

    Brahmajit Das authored and  David Seifert committed on 2023-09-07 09:13:26 UTC

    sci-biology/elph/elph-1.0.1-r3.ebuild sci-biology/elph/files/elph-1.0.1-drop-register-keyword.patch sci-biology/elph/elph-1.0.1-r2.ebuild
• Commits on 2023-07-29
  • sci-biology/biopython: drop 1.81

    a5230ca

    David Seifert committed on 2023-07-29 22:16:16 UTC

    sci-biology/biopython/biopython-1.81.ebuild
• Commits on 2023-07-21
  • sci-biology/biopython: use PEP517 build

    7dabbaa

    Pacho Ramos committed on 2023-07-21 08:55:03 UTC

    sci-biology/biopython/biopython-1.81-r1.ebuild sci-biology/biopython/files/biopython-1.81-python3.12.patch sci-biology/biopython/files/biopython-1.81-reportlab4.patch
• Commits on 2023-07-09
  • Revbump all acct-group and acct-user packages

    124ad96

    Mike Gilbert committed on 2023-07-09 17:38:23 UTC

    acct-group/_cron-failure/_cron-failure-0-r1.ebuild acct-group/adm/adm-0-r2.ebuild acct-group/aerospike-amc/aerospike-amc-0-r1.ebuild acct-group/airdcppd/airdcppd-0-r2.ebuild acct-group/alertmanager/alertmanager-0-r1.ebuild acct-group/amanda/amanda-0-r1.ebuild acct-group/amavis/amavis-0-r2.ebuild acct-group/amule/amule-0-r2.ebuild acct-group/android/android-0-r1.ebuild acct-group/anope/anope-0-r2.ebuild acct-group/apache/apache-0-r3.ebuild acct-group/apt-cacher-ng/apt-cacher-ng-0-r1.ebuild acct-group/argus/argus-0-r1.ebuild acct-group/arpwatch/arpwatch-0-r1.ebuild acct-group/artifactory/artifactory-0-r1.ebuild acct-group/aspnet/aspnet-0-r1.ebuild acct-group/asterisk/asterisk-0-r2.ebuild acct-group/at/at-0-r1.ebuild acct-group/atheme-services/atheme-services-0-r2.ebuild acct-group/audio/audio-0-r2.ebuild acct-group/automatic/automatic-0-r1.ebuild acct-group/_cron-failure/_cron-failure-0.ebuild acct-group/adm/adm-0-r1.ebuild acct-group/aerospike-amc/aerospike-amc-0.ebuild acct-group/airdcppd/airdcppd-0-r1.ebuild acct-group/alertmanager/alertmanager-0.ebuild acct-group/amanda/amanda-0.ebuild acct-group/amavis/amavis-0-r1.ebuild acct-group/amule/amule-0-r1.ebuild acct-group/android/android-0.ebuild acct-group/anope/anope-0-r1.ebuild acct-group/apache/apache-0-r2.ebuild acct-group/apt-cacher-ng/apt-cacher-ng-0.ebuild acct-group/argus/argus-0.ebuild acct-group/arpwatch/arpwatch-0.ebuild acct-group/artifactory/artifactory-0.ebuild acct-group/aspnet/aspnet-0.ebuild acct-group/asterisk/asterisk-0-r1.ebuild acct-group/at/at-0.ebuild acct-group/atheme-services/atheme-services-0-r1.ebuild acct-group/audio/audio-0-r1.ebuild acct-group/automatic/automatic-0.ebuild ...
  • Revbump all acct-group and acct-user packages

    124ad96

    Mike Gilbert committed on 2023-07-09 17:38:23 UTC

    acct-group/_cron-failure/_cron-failure-0-r1.ebuild acct-group/adm/adm-0-r2.ebuild acct-group/aerospike-amc/aerospike-amc-0-r1.ebuild acct-group/airdcppd/airdcppd-0-r2.ebuild acct-group/alertmanager/alertmanager-0-r1.ebuild acct-group/amanda/amanda-0-r1.ebuild acct-group/amavis/amavis-0-r2.ebuild acct-group/amule/amule-0-r2.ebuild acct-group/android/android-0-r1.ebuild acct-group/anope/anope-0-r2.ebuild acct-group/apache/apache-0-r3.ebuild acct-group/apt-cacher-ng/apt-cacher-ng-0-r1.ebuild acct-group/argus/argus-0-r1.ebuild acct-group/arpwatch/arpwatch-0-r1.ebuild acct-group/artifactory/artifactory-0-r1.ebuild acct-group/aspnet/aspnet-0-r1.ebuild acct-group/asterisk/asterisk-0-r2.ebuild acct-group/at/at-0-r1.ebuild acct-group/atheme-services/atheme-services-0-r2.ebuild acct-group/audio/audio-0-r2.ebuild acct-group/automatic/automatic-0-r1.ebuild acct-group/_cron-failure/_cron-failure-0.ebuild acct-group/adm/adm-0-r1.ebuild acct-group/aerospike-amc/aerospike-amc-0.ebuild acct-group/airdcppd/airdcppd-0-r1.ebuild acct-group/alertmanager/alertmanager-0.ebuild acct-group/amanda/amanda-0.ebuild acct-group/amavis/amavis-0-r1.ebuild acct-group/amule/amule-0-r1.ebuild acct-group/android/android-0.ebuild acct-group/anope/anope-0-r1.ebuild acct-group/apache/apache-0-r2.ebuild acct-group/apt-cacher-ng/apt-cacher-ng-0.ebuild acct-group/argus/argus-0.ebuild acct-group/arpwatch/arpwatch-0.ebuild acct-group/artifactory/artifactory-0.ebuild acct-group/aspnet/aspnet-0.ebuild acct-group/asterisk/asterisk-0-r1.ebuild acct-group/at/at-0.ebuild acct-group/atheme-services/atheme-services-0-r1.ebuild acct-group/audio/audio-0-r1.ebuild acct-group/automatic/automatic-0.ebuild ...
• Commits on 2023-07-06
  • dev-python/intervaltree: Remove old

    eb65ff9

    Michał Górny committed on 2023-07-06 12:08:03 UTC

    dev-python/intervaltree/intervaltree-3.1.0.ebuild
• Commits on 2023-07-05
  • dev-python/intervaltree: Stabilize 3.1.0-r1 ALLARCHES, #909687

    6ebe710

    Sam James committed on 2023-07-05 20:51:14 UTC

    dev-python/intervaltree/intervaltree-3.1.0-r1.ebuild
• Commits on 2023-06-09
  • sci-libs/dcmtk: destabilize for ~x86

    fa29ea6

    Arthur Zamarin committed on 2023-06-09 14:45:51 UTC

    sci-libs/dcmtk/dcmtk-3.6.7-r1.ebuild
  • sci-biology/uchime: destabilize for ~x86

    d0eaea7

    Arthur Zamarin committed on 2023-06-09 14:45:11 UTC

    sci-biology/uchime/uchime-4.2.40-r1.ebuild
  • sci-biology/trf: destabilize for ~x86

    4fbceea

    Arthur Zamarin committed on 2023-06-09 14:45:10 UTC

    sci-biology/trf/trf-4.04-r2.ebuild
  • sci-biology/treeviewx: destabilize for ~x86

    34c4182

    Arthur Zamarin committed on 2023-06-09 14:45:10 UTC

    sci-biology/treeviewx/treeviewx-0.5.1-r3.ebuild
  • sci-biology/tree-puzzle: destabilize for ~x86

    7aab8f0

    Arthur Zamarin committed on 2023-06-09 14:45:10 UTC

    sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild
  • sci-biology/stride: destabilize for ~x86

    3c23eda

    Arthur Zamarin committed on 2023-06-09 14:45:10 UTC

    sci-biology/stride/stride-20011129-r1.ebuild
  • sci-biology/sibsim4: destabilize for ~x86

    7817549

    Arthur Zamarin committed on 2023-06-09 14:45:09 UTC

    sci-biology/sibsim4/sibsim4-0.20.ebuild
  • sci-biology/probcons: destabilize for ~x86

    969fd1f

    Arthur Zamarin committed on 2023-06-09 14:45:09 UTC

    sci-biology/probcons/probcons-1.12-r1.ebuild
  • sci-biology/pilercr: destabilize for ~x86

    13a5091

    Arthur Zamarin committed on 2023-06-09 14:45:09 UTC

    sci-biology/pilercr/pilercr-1.0-r2.ebuild
  • sci-biology/piler: destabilize for ~x86

    36810ee

    Arthur Zamarin committed on 2023-06-09 14:45:09 UTC

    sci-biology/piler/piler-1.0-r2.ebuild
  • sci-biology/phyml: destabilize for ~x86

    1af4d98

    Arthur Zamarin committed on 2023-06-09 14:45:08 UTC

    sci-biology/phyml/phyml-2.4.5-r4.ebuild
  • sci-biology/pals: destabilize for ~x86

    51bd372

    Arthur Zamarin committed on 2023-06-09 14:45:08 UTC

    sci-biology/pals/pals-1.0-r2.ebuild
  • sci-biology/muscle: destabilize for ~x86

    9d8c251

    Arthur Zamarin committed on 2023-06-09 14:45:08 UTC

    sci-biology/muscle/muscle-3.8.31.ebuild
  • sci-biology/mothur: destabilize for ~x86

    21f3fab

    Arthur Zamarin committed on 2023-06-09 14:45:08 UTC

    sci-biology/mothur/mothur-1.27.0-r1.ebuild
  • sci-biology/infernal: destabilize for ~x86

    c46cba7

    Arthur Zamarin committed on 2023-06-09 14:45:07 UTC

    sci-biology/infernal/infernal-1.0.2-r1.ebuild
  • sci-biology/glimmerhmm: destabilize for ~x86

    b3c0929

    Arthur Zamarin committed on 2023-06-09 14:45:07 UTC

    sci-biology/glimmerhmm/glimmerhmm-3.0.1-r1.ebuild
  • sci-biology/finchtv: destabilize for ~x86

    75f505d

    Arthur Zamarin committed on 2023-06-09 14:45:07 UTC

    sci-biology/finchtv/finchtv-1.3.1-r3.ebuild
  • sci-biology/eugene: destabilize for ~x86

    2caf9db

    Arthur Zamarin committed on 2023-06-09 14:45:07 UTC

    sci-biology/eugene/eugene-4.1d-r1.ebuild
  • sci-biology/clustalx: destabilize for ~x86

    1227a2d

    Arthur Zamarin committed on 2023-06-09 14:45:06 UTC

    sci-biology/clustalx/clustalx-2.1-r3.ebuild
  • sci-biology/clustalw: destabilize for ~x86

    6aca455

    Arthur Zamarin committed on 2023-06-09 14:45:06 UTC

    sci-biology/clustalw/clustalw-1.83-r4.ebuild sci-biology/clustalw/clustalw-2.1-r2.ebuild
  • sci-biology/clustal-omega: destabilize for ~x86

    2afc16f

    Arthur Zamarin committed on 2023-06-09 14:45:06 UTC

    sci-biology/clustal-omega/clustal-omega-1.2.4-r1.ebuild
  • sci-biology/biosql: destabilize for ~x86

    5085417

    Arthur Zamarin committed on 2023-06-09 14:45:06 UTC

    sci-biology/biosql/biosql-1.0.1-r2.ebuild
  • sci-biology/bioperl-run: destabilize for ~x86

    95c11f7

    Arthur Zamarin committed on 2023-06-09 14:45:05 UTC

    sci-biology/bioperl-run/bioperl-run-1.6.9-r1.ebuild
  • sci-biology/bioperl-network: destabilize for ~x86

    7a873f6

    Arthur Zamarin committed on 2023-06-09 14:45:05 UTC

    sci-biology/bioperl-network/bioperl-network-1.6.9-r1.ebuild
  • sci-biology/bioperl-db: destabilize for ~x86

    848d9f4

    Arthur Zamarin committed on 2023-06-09 14:45:05 UTC

    sci-biology/bioperl-db/bioperl-db-1.6.9-r2.ebuild
  • sci-biology/bioperl: destabilize for ~x86

    0dda7c0

    Arthur Zamarin committed on 2023-06-09 14:45:04 UTC

    sci-biology/bioperl/bioperl-1.6.9-r1.ebuild
  • sci-biology/augustus: destabilize for ~x86

    7cfe7ab

    Arthur Zamarin committed on 2023-06-09 14:45:04 UTC

    sci-biology/augustus/augustus-2.5.5.ebuild
• Commits on 2023-05-29
  • dev-python/intervaltree: enable py3.12

    9b2b30a

    Arthur Zamarin committed on 2023-05-29 04:53:59 UTC

    dev-python/intervaltree/intervaltree-3.1.0-r1.ebuild
  • dev-python/intervaltree: add github upstream metadata

    0f25e59

    Arthur Zamarin committed on 2023-05-29 04:53:21 UTC

    dev-python/intervaltree/metadata.xml
  • dev-python/intervaltree: EAPI=8, PEP517

    c527a44

    Arthur Zamarin committed on 2023-05-29 04:52:53 UTC

    dev-python/intervaltree/intervaltree-3.1.0-r1.ebuild
• Commits on 2023-05-25
  • */*: remove sparc-solaris keyword

    4aebe55

    Fabian Groffen committed on 2023-05-25 19:49:16 UTC

    app-admin/chrpath/chrpath-0.16-r1.ebuild app-admin/eselect/eselect-1.4.20.ebuild app-admin/eselect/eselect-1.4.22.ebuild app-admin/gamin/gamin-0.1.10-r1.ebuild app-admin/haskell-updater/haskell-updater-1.3.2-r1.ebuild app-admin/makepasswd/makepasswd-1.10.ebuild app-admin/perl-cleaner/perl-cleaner-2.30-r1.ebuild app-admin/perl-cleaner/perl-cleaner-2.30.ebuild app-admin/perl-cleaner/perl-cleaner-9999.ebuild app-admin/pwgen/pwgen-2.08-r1.ebuild app-admin/pwgen/pwgen-2.08-r2.ebuild app-admin/sudo/sudo-1.9.12_p2.ebuild app-admin/sudo/sudo-1.9.13_p3-r1.ebuild app-admin/sudo/sudo-1.9.13_p3.ebuild app-admin/sudo/sudo-9999.ebuild app-alternatives/awk/awk-4.ebuild app-alternatives/bc/bc-0.ebuild app-alternatives/bzip2/bzip2-1.ebuild app-alternatives/cpio/cpio-0.ebuild app-alternatives/gzip/gzip-0.ebuild app-alternatives/lex/lex-0-r1.ebuild ...
  • */*: remove sparc-solaris keyword

    4aebe55

    Fabian Groffen committed on 2023-05-25 19:49:16 UTC

    app-admin/chrpath/chrpath-0.16-r1.ebuild app-admin/eselect/eselect-1.4.20.ebuild app-admin/eselect/eselect-1.4.22.ebuild app-admin/gamin/gamin-0.1.10-r1.ebuild app-admin/haskell-updater/haskell-updater-1.3.2-r1.ebuild app-admin/makepasswd/makepasswd-1.10.ebuild app-admin/perl-cleaner/perl-cleaner-2.30-r1.ebuild app-admin/perl-cleaner/perl-cleaner-2.30.ebuild app-admin/perl-cleaner/perl-cleaner-9999.ebuild app-admin/pwgen/pwgen-2.08-r1.ebuild app-admin/pwgen/pwgen-2.08-r2.ebuild app-admin/sudo/sudo-1.9.12_p2.ebuild app-admin/sudo/sudo-1.9.13_p3-r1.ebuild app-admin/sudo/sudo-1.9.13_p3.ebuild app-admin/sudo/sudo-9999.ebuild app-alternatives/awk/awk-4.ebuild app-alternatives/bc/bc-0.ebuild app-alternatives/bzip2/bzip2-1.ebuild app-alternatives/cpio/cpio-0.ebuild app-alternatives/gzip/gzip-0.ebuild app-alternatives/lex/lex-0-r1.ebuild ...
  • */*: remove sparc-solaris keyword

    4aebe55

    Fabian Groffen committed on 2023-05-25 19:49:16 UTC

    app-admin/chrpath/chrpath-0.16-r1.ebuild app-admin/eselect/eselect-1.4.20.ebuild app-admin/eselect/eselect-1.4.22.ebuild app-admin/gamin/gamin-0.1.10-r1.ebuild app-admin/haskell-updater/haskell-updater-1.3.2-r1.ebuild app-admin/makepasswd/makepasswd-1.10.ebuild app-admin/perl-cleaner/perl-cleaner-2.30-r1.ebuild app-admin/perl-cleaner/perl-cleaner-2.30.ebuild app-admin/perl-cleaner/perl-cleaner-9999.ebuild app-admin/pwgen/pwgen-2.08-r1.ebuild app-admin/pwgen/pwgen-2.08-r2.ebuild app-admin/sudo/sudo-1.9.12_p2.ebuild app-admin/sudo/sudo-1.9.13_p3-r1.ebuild app-admin/sudo/sudo-1.9.13_p3.ebuild app-admin/sudo/sudo-9999.ebuild app-alternatives/awk/awk-4.ebuild app-alternatives/bc/bc-0.ebuild app-alternatives/bzip2/bzip2-1.ebuild app-alternatives/cpio/cpio-0.ebuild app-alternatives/gzip/gzip-0.ebuild app-alternatives/lex/lex-0-r1.ebuild ...
  • */*: remove sparc-solaris keyword

    4aebe55

    Fabian Groffen committed on 2023-05-25 19:49:16 UTC

    app-admin/chrpath/chrpath-0.16-r1.ebuild app-admin/eselect/eselect-1.4.20.ebuild app-admin/eselect/eselect-1.4.22.ebuild app-admin/gamin/gamin-0.1.10-r1.ebuild app-admin/haskell-updater/haskell-updater-1.3.2-r1.ebuild app-admin/makepasswd/makepasswd-1.10.ebuild app-admin/perl-cleaner/perl-cleaner-2.30-r1.ebuild app-admin/perl-cleaner/perl-cleaner-2.30.ebuild app-admin/perl-cleaner/perl-cleaner-9999.ebuild app-admin/pwgen/pwgen-2.08-r1.ebuild app-admin/pwgen/pwgen-2.08-r2.ebuild app-admin/sudo/sudo-1.9.12_p2.ebuild app-admin/sudo/sudo-1.9.13_p3-r1.ebuild app-admin/sudo/sudo-1.9.13_p3.ebuild app-admin/sudo/sudo-9999.ebuild app-alternatives/awk/awk-4.ebuild app-alternatives/bc/bc-0.ebuild app-alternatives/bzip2/bzip2-1.ebuild app-alternatives/cpio/cpio-0.ebuild app-alternatives/gzip/gzip-0.ebuild app-alternatives/lex/lex-0-r1.ebuild ...
• Commits on 2023-05-24
  • */*: remove x86-solaris keyword

    82e9ddd

    Fabian Groffen committed on 2023-05-24 19:41:33 UTC

    app-admin/chrpath/chrpath-0.16-r1.ebuild app-admin/eselect/eselect-1.4.20.ebuild app-admin/eselect/eselect-1.4.22.ebuild app-admin/gam-server/gam-server-0.1.10-r3.ebuild app-admin/gamin/gamin-0.1.10-r1.ebuild app-admin/haskell-updater/haskell-updater-1.3.2-r1.ebuild app-admin/makepasswd/makepasswd-1.10.ebuild app-admin/perl-cleaner/perl-cleaner-2.30-r1.ebuild app-admin/perl-cleaner/perl-cleaner-2.30.ebuild app-admin/perl-cleaner/perl-cleaner-9999.ebuild app-admin/pwgen/pwgen-2.08-r1.ebuild app-admin/pwgen/pwgen-2.08-r2.ebuild app-alternatives/awk/awk-4.ebuild app-alternatives/bc/bc-0.ebuild app-alternatives/bzip2/bzip2-1.ebuild app-alternatives/cpio/cpio-0.ebuild app-alternatives/gzip/gzip-0.ebuild app-alternatives/lex/lex-0-r1.ebuild app-alternatives/sh/sh-0.ebuild app-alternatives/tar/tar-0.ebuild app-alternatives/yacc/yacc-1-r2.ebuild ...
• Commits on 2023-05-22
  • dev-libs/igraph: new revision to unbundle plfit.

    7b2d22d

    Michael Orlitzky committed on 2023-05-22 20:05:16 UTC

    dev-libs/igraph/igraph-0.10.4-r1.ebuild
• Commits on 2023-05-20
  • sci-biology/biopandas: Remove old

    0192932

    Michał Górny committed on 2023-05-20 07:33:37 UTC

    sci-biology/biopandas/Manifest sci-biology/biopandas/biopandas-0.2.7.ebuild
• Commits on 2023-05-14
  • dev-libs/igraph: drop 0.9.4

    c91f02b

    Andreas Sturmlechner committed on 2023-05-14 10:27:54 UTC

    dev-libs/igraph/Manifest dev-libs/igraph/files/igraph-0.9.2-disable-broken-tests.patch dev-libs/igraph/igraph-0.9.4.ebuild
• Commits on 2023-05-05
  • sci-biology/samtools: drop 0.1.20-r4

    f8ed402

    David Seifert committed on 2023-05-05 09:19:58 UTC

    profiles/package.mask sci-biology/samtools/Manifest sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch sci-biology/samtools/samtools-0.1.20-r4.ebuild
• Commits on 2023-05-02
  • dev-python/intervaltree: Keyword 3.1.0 arm64, #905048

    6b9870a

    Arthur Zamarin committed on 2023-05-02 15:20:18 UTC

    dev-python/intervaltree/intervaltree-3.1.0.ebuild
• Commits on 2023-05-01
  • dev-libs/igraph: Stabilize 0.10.4 amd64, #905344

    81fd036

    Sam James committed on 2023-05-01 00:30:03 UTC

    dev-libs/igraph/igraph-0.10.4.ebuild