Biology Project – Gentoo Packages

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Latest Commits

Commits on 2026-02-11
- sci-biology/raxml: fix C23 build issues
  c7ca08d
  David Seifert committed on 2026-02-11 10:00:41 UTC
  sci-biology/raxml/files/raxml-8.2.13-c23.patchsci-biology/raxml/raxml-8.2.13.ebuild
- sci-biology/paml: add 4.10.10, drop 4.9j
  18d0de1
  NHOrus authored and Sam James committed on 2026-02-11 03:42:08 UTC
  sci-biology/paml/paml-4.10.10.ebuildsci-biology/paml/Manifestsci-biology/paml/files/paml-4.9j-fno-common.patchsci-biology/paml/files/paml-4.9j-makefile.patchsci-biology/paml/paml-4.9j.ebuild
Commits on 2026-02-04
- sci-biology/emboss: fix GCC 15 errors
  82fd3f9
  David Seifert committed on 2026-02-04 14:10:39 UTC
  sci-biology/emboss/emboss-6.6.0-r4.ebuildsci-biology/emboss/Manifestsci-biology/emboss/emboss-6.6.0-r3.ebuild
Commits on 2026-02-03
- sci-biology/mafft: drop 7.490
  010e78a
  David Seifert committed on 2026-02-03 16:26:14 UTC
  sci-biology/mafft/Manifestsci-biology/mafft/mafft-7.490.ebuild
Commits on 2026-02-02
- sci-biology/bcftools: add 1.23
  62cbc4d
  David Seifert committed on 2026-02-02 16:03:49 UTC
  sci-biology/bcftools/bcftools-1.23.ebuildsci-biology/bcftools/Manifest
- sci-biology/samtools: add 1.23
  270ff0b
  David Seifert committed on 2026-02-02 16:03:48 UTC
  sci-biology/samtools/samtools-1.23.ebuildsci-biology/samtools/Manifest
- sci-libs/htslib: add 1.23
  2d1b15c
  David Seifert committed on 2026-02-02 16:03:47 UTC
  sci-libs/htslib/htslib-1.23.ebuildsci-libs/htslib/Manifest
Commits on 2026-01-28
- sci-biology/mothur: drop 1.48.0
  00dbc02
  Andreas Sturmlechner committed on 2026-01-28 18:30:48 UTC
  sci-biology/mothur/Manifestsci-biology/mothur/mothur-1.48.0.ebuild
Commits on 2026-01-26
- sci-biology/mothur: Stabilize 1.48.2 amd64, #968778
  12aa3d7
  Sam James committed on 2026-01-26 23:02:20 UTC
  sci-biology/mothur/mothur-1.48.2.ebuild
Commits on 2026-01-14
- sci-biology/mothur: Drop back to ~amd64, update description
  8c557e6
  Andreas Sturmlechner committed on 2026-01-14 22:56:41 UTC
  sci-biology/mothur/mothur-1.48.2.ebuild
- sci-biology/mothur: drop 1.27.0-r1
  1d568bf
  Andreas Sturmlechner committed on 2026-01-14 22:52:05 UTC
  sci-biology/mothur/Manifestsci-biology/mothur/files/mothur-1.27.0-makefile.patchsci-biology/mothur/files/mothur-1.27.0-overflows.patchsci-biology/mothur/mothur-1.27.0-r1.ebuild
- sci-biology/mothur: add 1.48.2 and fix build w/ boost-1.89
  ab02fb8
  Andreas Sturmlechner committed on 2026-01-14 22:52:05 UTC
  sci-biology/mothur/files/mothur-1.48.2-boost-1.89.patchsci-biology/mothur/mothur-1.48.2.ebuildsci-biology/mothur/Manifest
Commits on 2025-12-24
- dev-python/intervaltree: Bump to 3.2.1
  6435028
  Michał Górny committed on 2025-12-24 06:40:10 UTC
  dev-python/intervaltree/intervaltree-3.2.1.ebuilddev-python/intervaltree/Manifest
Commits on 2025-12-22
- dev-python/intervaltree: intervaltree still requires sortedcontainers
  92d0837
  Nowa Ammerlaan committed on 2025-12-22 10:09:35 UTC
  dev-python/intervaltree/intervaltree-3.2.0-r1.ebuilddev-python/intervaltree/intervaltree-3.2.0.ebuild
Commits on 2025-12-20
- dev-python/intervaltree: Bump to 3.2.0
  52a8d25
  Michał Górny committed on 2025-12-20 10:15:24 UTC
  dev-python/intervaltree/intervaltree-3.2.0.ebuilddev-python/intervaltree/Manifest
Commits on 2025-12-19