sci-libs

Bug Reports

• sci-libs/gedcom-parse - The GEDCOM parser library 0.90.0 (new package)

  84274 - Assigned to Default Assignee for New Packages
• sci-libs/itk - the National Library of Medicine Insight Segmentation and Registration Toolkit

  124241 - Assigned to Default Assignee for New Packages
• sci-libs/candystore, a post processor for CalculiX

  246611 - Assigned to Default Assignee for New Packages
• sci-libs/rsl-1.40.ebulid (new ebuild)

  277478 - Assigned to Default Assignee for New Packages
• sci-libs/libgis (new ebuild)

  290417 - Assigned to Default Assignee for New Packages
• sci-libs/vision-workbench-2.0_beta3 (New package)

  290626 - Assigned to Default Assignee for New Packages
• sci-libs/pg2plplot - Assist the transition from PGPlot to PLplot in Fortran programs

  450912 - Assigned to Default Assignee for New Packages
• sci-libs/versor - C++ library for Euclidean and Conformal Geometric Algebra

  522294 - Assigned to Default Assignee for New Packages
• sci-libs/teem - Scientific Raster Data Visualization Libraries

  529980 - Assigned to Default Assignee for New Packages
• >=sci-libs/cln-1.3.3[+doc]: !pdfTeX error: pdfetex (file /usr/share/texmf-dist/fonts/enc/dvips/cm-super/cm- super-t1.enc): invalid encoding vector (a name or `[' missing):

  551394 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/hdf5 - hdf5-1.8.9-mpicxx.patch causes macro redefinition warnings with clang-3.7

  560964 - Assigned to Gentoo Science Related Packages
• sci-libs/clrng - library for uniform random number generation in OpenCL.

  574864 - Assigned to Default Assignee for New Packages
• sci-libs/adolc-2.5.2 : /.../ampisupport.cpp:53:56: error: ‘ADTOOL_AMPI_push_CallCodeReserve’ was not declared in this scope

  586746 - Assigned to Gentoo Science Related Packages
• sci-libs/libsvm-3.17-r3: add octave support

  591354 - Assigned to Gentoo Science Related Packages
• sci-libs/daal: library of optimized algorithmic building blocks for data analysis stages most commonly associated with solving Big Data problems

  596132 - Assigned to Default Assignee for New Packages
• sci-libs/arpack-3.1.3-r1 - configure: error: Cannot find LAPACK libraries

  596920 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.4.0: build tries to write to /root/cache when running `dot` for doxygen generation

  602608 - Assigned to Embedded Gentoo Team
• sci-libs/quicktions ebuild request

  612666 - Assigned to Default Assignee for New Packages
• sci-libs/libccd-2.0[doc] Extension error: sphinx.ext.mathjax: other math package is already loaded

  615672 - Assigned to Alexis Ballier
• sci-libs/pastix-5.2.3 fails tests - cp: cannot create regular file '/usr/bin/pastix-conf': Permission denied

  619316 - Assigned to Gentoo Science Related Packages
• sci-libs/mrpt - ebuild request The Mobile Robot Programming Toolkit

  621566 - Assigned to Default Assignee for New Packages
• sci-libs/pgplot-5.2.2-r6 will not build with USE static-libs: recompile with -fPIC

  625776 - Assigned to Gentoo Science Related Packages
• sci-libs/kim-api-1.8.2 : /.../Makefile.SanityCheck:70: *** KIM API requires the xxd utility to be installed in order to build. Stop.

  635910 - Assigned to Christoph Junghans (RETIRED)
• sci-libs/coinor-cbc-2.8.9 : ./.../libCbcSolver.so: undefined reference to virtual thunk to OsiClpSolverInterface::getColName[abi:cxx11](int, unsigned int) const

  638240 - Assigned to Gentoo Science Related Packages
• sci-libs/arpack-3.5.0 : configure: error: cannot find BLAS libraries

  638384 - Assigned to Gentoo Science Related Packages
• sci-libs/kim-api-1.8.2 : Makefile:<snip>: *** Makefile.KIM_Config does not exist. Please create this file in order to compile the KIM API package. Stop.

  642850 - Assigned to Christoph Junghans (RETIRED)
• sci-libs/htslib - provide USE flags for curl and gcs s3 plugins

  645674 - Assigned to Gentoo Science Biology related packages
• sci-libs/pcl-1.8.1 installs broken pcl_features-1.8.pc

  646124 - Assigned to Alexis Ballier
• sci-libs/atlas - *** No rule to make target 'liblapack.a', needed by 'libclapack.a'. Stop

  648386 - Assigned to Gentoo Science Related Packages
• sci-libs/xdmf2-1.0_p141226-r2 with sys-cluster/mpich-3.2-r2 - Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") -- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS)

  649426 - Assigned to Gentoo Science Related Packages
• sci-libs/xdmf2-1.0_p141226-r4: compile failure: libXdmfCore.so: undefined reference to H5...

  657964 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.11.39 - ACCESS DENIED cannot create directory ‘/etc/env.d/alternatives/cblas’: Permission denied

  658026 - Assigned to Gentoo Science Related Packages
• sci-libs/udunits-2.2.20 : * Currently no working fortran compiler is available (see /var/tmp/portage/sci-libs/udunits-2.2.20/temp/_fortran_compile_test.log for information)

  662538 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal: Validate DEPEND on virtual/mysql

  666056 - Assigned to Sci-geo Project
• sci-libs/torch7 framework new package request

  667116 - Assigned to Default Assignee for New Packages
• sci-libs/dcmtk-3.6.3 still put files in /usr/etc instead of /etc

  672198 - Assigned to Gentoo Science Biology related packages
• sci-libs/calculix - CalculiX - A Free Software Three-Dimensional Structural Finite Element Program

  672548 - Assigned to Default Assignee for New Packages
• sci-libs/netcdf-4.6.1-r1: test failures (t_dap3a, test_cvt3, test_vara, tst_ncdap3.sh)

  673200 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.8.21 - pkg-config files are not generated

  675606 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-1.16 : uninstalling, orphaned links are left behind, causing breakage

  677044 - Assigned to Gentoo Science Related Packages
• sci-libs/libccd - rename USE=double to USE=double-precision

  682176 - Assigned to Alexis Ballier
• sci-libs/hdf5-1.10.5 USE="fortran mpi" - FATAL ERROR: Cannot read module file 'mpi.mod' opened at (1), because it was created by a different version of GNU Fortran

  682794 - Assigned to Gentoo Science Related Packages
• sci-libs/mdal: Mesh Data Abstraction Library - C++ library for handling unstructured mesh data

  684538 - Assigned to Default Assignee for New Packages
• sci-libs/gsl-2.5: test failure: test multifit_nlinear fails

  687342 - Assigned to Gentoo Science Related Packages
• sci-libs/gdcm-2.8.8::imaging - refman.pdf - Error

  687438 - Assigned to Gert Wollny
• sci-libs/mathgl-2.4.1: CMake Error at scripts/qt5.cmake:8 (message): Couldn't find Qt5 OpenGL library

  688172 - Assigned to Gentoo Science Related Packages
• sci-libs/umfpack-5.6.2 - configure: error: Cannot find blas libraries

  688792 - Assigned to Gentoo Science Related Packages
• sci-libs/clapack-3.2.1-r8: CMake Error at CMakeLists.txt:51 (message): --> BLAS libraries needed but not found

  689288 - Assigned to Gentoo Science Related Packages
• sci-libs/ViSP-3.2.0-r2 : /.../io.inl.hpp:105:16: error: readJPEG is not a member of vpImageIo

  694568 - Assigned to Alexis Ballier
• sci-libs/cln-1.3.6 fails to install with USE=doc --> FileNotFoundError: [Errno 2] No such file or directory: b'/doc/cln.pdf'

  707750 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/ann - A Library for Approximate Nearest Neighbor Searching

  709552 - Assigned to Default Assignee for New Packages
• sci-libs/parmetis-4.0.3_p20230326-r1 - QA Notice: The following files contain insecure RUNPATHs: .../usr/lib64/libparmetis.so

  709598 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3 : ebuild uses colon (:) as a sed delimiter

  711156 - Assigned to Gentoo Science Related Packages
• sci-libs/cholmod-3.0.13 : configure: error: Could not find ccolamd library

  711540 - Assigned to Gentoo Science Related Packages
• sci-libs/clblast-0.10.0: CMake Error at /.../FindPackageHandleStandardArgs.cmake:146: Could NOT find OpenCL (missing: OPENCL_LIBRARIES)

  711990 - Assigned to Gentoo Science Related Packages
• sci-libs/avogadrolibs-1.93.0 fails to build with USE="vtk"

  712962 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/sundials-6.2.0 fails tests on x86

  715556 - Assigned to Gentoo Science Related Packages
• sci-libs/dmlc-core-0.5 : /.../logging.h: fatal error: execinfo.h: No such file or directory

  715576 - Assigned to Gentoo musl team
• sci-libs/hdf-4.2.13-r1 : local_nc.h: fatal error: rpc/types.h: No such file or directory

  715632 - Assigned to Gentoo musl team
• sci-libs/coinor-alps-1.5.7 : AlpsSubTree.cpp: error: variable AlpsSubTree::exploreUnitWork(bool, int, double, AlpsExitStatus&, int

  715916 - Assigned to Gentoo musl team
• sci-libs/pcl-1.14.0 : /.../pcl_macros.h: error: #error aligned_malloc not supported on your platform

  716186 - Assigned to Gentoo musl team
• sci-libs/ogdi-4.1.0-r1 installs shared libraries that lack a SONAME

  717178 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.12.12 cannot had hsl use flag

  720998 - Assigned to Gentoo Science Related Packages
• sci-libs/ogdi fails tests

  721358 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp-1.17.6 : ClpFactorization.cpp: error: double CoinFactorization::ftranCountInput_ is protected within this cont

  721930 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.10.5 : CbcCutGenerator.cpp: error: class CglTreeInfo has no member named parentSolver

  721932 - Assigned to Gentoo Science Related Packages
• sci-libs/lemon-1.3.1 : /.../ld: /.../libClp.so: undefined reference to CoinArrayWithLength::conditionalNew(long)

  722620 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh License appears to be incorrect

  723788 - Assigned to Licenses team
• sci-libs/eccodes-2.16.0 : -- Performing Test IEEE_BE - Failed

  725252 - Assigned to No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
• sci-libs/ViSP-3.3.0 : /.../type_traits: error: static assertion failed: template argument must be a complete class or an unbounded

  725392 - Assigned to Alexis Ballier
• sci-libs/cminpack fails tests

  725456 - Assigned to Gentoo Science Related Packages
• sci-libs/ogdi-4.1.0-r1 calls ar directly

  725618 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx fails tests

  725620 - Assigned to Gentoo Science Related Packages
• sci-libs/orocos-bfl-0.8.0 fails tests

  725624 - Assigned to Alexis Ballier
• sci-libs/orocos-bfl-0.8.0: QA: ./revision: line 1: svn: command not found

  727206 - Assigned to Alexis Ballier
• sci-libs/arprec-2.2.19 installs shared libraries that lack NEEDED entries

  727972 - Assigned to Gentoo Science Related Packages
• sci-libs/ViSP-3.3.0: error: '/usr/lib64/liblapack.a', needed by 'lib/libvisp_core.so.3.3.0', missing and no known rule to make it

  729576 - Assigned to Alexis Ballier
• sci-libs/spqr-2.0.9-r4 : I can't find file `epsf'.

  729634 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9 - qrdemoc.c:(.text.startup+0x94): undefined reference to `cholmod_l_norm_sparse'

  729636 - Assigned to Gentoo Science Related Packages
• sci-libs/umfpack-5.7.9 fails tests

  731248 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.5.7 fails to compile: ordered comparison between pointer and zero ('int *' and 'int')

  731856 - Assigned to Gentoo Science Related Packages
• sci-libs/hypre-2.21.0 fails to compile (ld.lld: error: undefined symbol: omp_set_num_threads)

  731864 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/dmlc-core-0_p20170719-r1: CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:165 (message): Could NOT find OpenMP_C

  731868 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/eccodes-2.16.0 fails to compile: Error: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/REAL(4)).

  731876 - Assigned to No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
• sci-libs/colpack-1.0.10 fails to compile: GraphColoring/GraphColoring.cpp:974:20: error: expected an OpenMP directive

  731900 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-6.5.0 fails to compile: ld.lld: error: can't create dynamic relocation R_X86_64_32 against local symbol in readonly segment

  731904 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec calls commands that do not exist (./configure: line 5219: ax_cxx_fma: command not found)

  731912 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 fails to compile: erfc.cpp:43:33: error: non-constant-expression cannot be narrowed from type

  731916 - Assigned to Gentoo Science Related Packages
• sci-libs/dealii-9.5.2-r1 installs compressed files (manpages, documentation)

  731918 - Assigned to Matthias Maier
• sci-libs/cqrlib fails to compile

  731928 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap fails tests

  733088 - Assigned to Alexis Ballier
• sci-libs/ViSP-3.5.0-r1 installs compressed files (manpages, documentation)

  736637 - Assigned to Alexis Ballier
• sci-libs/fcl-0.6.1 fails tests

  738560 - Assigned to Alexis Ballier
• sci-libs/libsigrok: failing test tests/main

  739502 - Assigned to Embedded Gentoo Team
• sci-libs/ViSP-3.5.0-r1 : One or more CMake variables were not used by the project:

  739620 - Assigned to Alexis Ballier
• sci-libs/cgnslib-3.4.0 fails to compile: ld.lld: error: can't create dynamic relocation R_X86_64_32 against local symbol in readonly segment

  741388 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5-r1 fails tests

  741438 - Assigned to Gentoo Science Related Packages
• sci-libs/ignition-fuel-tools-4.1.0 fails tests

  741442 - Assigned to Alexis Ballier
• sci-libs/lemon-1.3.1 fails tests

  741512 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.3.2 fails tests

  741528 - Assigned to Gentoo Science Related Packages
• sci-libs/orocos-bfl-0.8.0: src/filter/mixtureParticleFilter.cpp:105:27: error: member reference base type 'Mixture<SVar> *' is not a structure or union

  741530 - Assigned to Alexis Ballier
• sci-libs/pastix-5.2.3 fails tests

  741532 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9 fails tests

  741604 - Assigned to Gentoo Science Related Packages
• sci-libs/dmlc-core-0_p20170719 : /.../s3_filesys.cc: error: aggregate HMAC_CTX ctx has incomplete type and cannot be defined

  743004 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/indilib-1.9.8 installs static library /usr/lib64/libindiclient.a

  746050 - Assigned to Gentoo KDE team
• sci-libs/clblast: enable BLAS/CBLAS drop in replacement functionality

  747142 - Assigned to Gentoo Science Related Packages
• sci-libs/blis: make eselect-ldso behaviour default and remove eselect-ldso flag

  747301 - Assigned to Gentoo Science Related Packages
• sci-libs/openblas: make eselect-ldso behaviour default and remove eselect-ldso flag

  747313 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.2.22-r1: parallel build error: i686-pc-linux-gnu/bin/ld: cannot open output file /var/tmp/portage/sci-libs/pastix-5.2.2.22-r1/image//usr/lib/libmatrix_driver_32bit_nompi_smp_int_double_real_scotch_.so: No such file or directory

  754321 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl: symlink provider for BLAS CBLAS LAPACK LAPACKE no longer works

  754930 - Assigned to Gentoo Science Related Packages
• sci-libs/scikit-image-0.17.2-r1 fails to compile

  755443 - Assigned to Gentoo Science Related Packages
• sci-libs/libticonv-1.1.5 :torture_ticonv.c:(.text.startup+<snip>): undefined reference to ticonv_iconv_open

  756718 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.2.0 USE=doc Extension error: Could not import extension breathe (exception: No module named 'breathe')

  759523 - Assigned to Sci-geo Project
• sci-libs/lapack-3.9.0 fails to build with existing ninja versions

  760153 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3 : sopalin/.../starpu_submit_tasks.c: error: expected expression before ; token

  769779 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 - main.cpp: error: variable or field FC_FUNC_ declared void

  775293 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.0.1 calls python directly (dev-lang/python-exec[-native-symlinks])

  776391 - Assigned to Matthias Maier
• sci-libs/symengine-0.7.0[doc] failed to emerge (CMake Error: File [...]symengine-0.7.0/doc/Doxyfile does not exist.)

  778593 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/netcdf-cxx-4.3.1[examples] install useless .o in /usr/share

  779352 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.5.2-r1 - x86_64-pc-linux-gnu-gcc: error: src/.../libdrivers.o: No such file or directory

  780840 - Assigned to Embedded Gentoo Team
• sci-libs/ignition-math-6.5.0: ignores -j2

  789486 - Assigned to Alexis Ballier
• sci-libs/alglib-3.17.0 fails tests

  789750 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3[starpu] - /.../ld: sopalin/.../starpu_submit_tasks_ge.o:(.bss+<snip>): multiple definition of starpu_pastix_sched_po

  790425 - Assigned to Gentoo Science Related Packages
• sci-libs/pcl-1.11.1 Could not import extension sphinxcontrib.doxylink.doxylink (exception: No module named 'sphinxcontrib.doxylink')

  790578 - Assigned to Alexis Ballier
• sci-libs/libint-2.9.0 does not respect LDFLAGS

  792384 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-* examples installed unconditionally

  792900 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.7.4 QA Notice: The following files contain insecure RUNPATHs

  795822 - Assigned to Gentoo Science Related Packages
• sci-libs/gts-20121130 QA Notice: Missing soname symlink

  795831 - Assigned to Gentoo Science Related Packages
• sci-libs/dcmtk: is OFFIS license free?

  796491 - Assigned to Licenses team
• sci-libs/ViSP-3.3.0-r1[pcl] error: ‘isFinite’ is not a member of ‘pcl’

  796806 - Assigned to Alexis Ballier
• sci-libs/libsigrok-0.5.2-r2 - x86_64-pc-linux-gnu-gcc: error: missing filename after -o

  799845 - Assigned to Embedded Gentoo Team
• sci-libs/lis-1.6.5 - /.../ld: fortran/.../libsaamg.a(lis_s_aggregate_mod.o): relocation R_X86_64_PC32 against symbol _data_structu

  800644 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 - multiple definition of `ATL_SetAtomicCount'; libatlas.a(ATL_SetAtomicCount_arch.o):ATL_SetAtomicCount_arch.c:(.text+0x0): first defined here

  801223 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap-1.9.8 - ninja: error: unknown target docs_dynamicEDT3D

  801232 - Assigned to Alexis Ballier
• sci-libs/pastix-5.2.3 calls ranlib directly

  802180 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-2.7 - FAIL: test_c11

  805578 - Assigned to Gentoo Science Related Packages
• sci-libs/ceres-solver-2.0.0 - /.../ld: /.../libunwind-x86_64.so: error adding symbols: file in wrong format

  806478 - Assigned to Gentoo Science Related Packages
• sci-libs/orocos_kdl-1.5.1 installs files into unexpected paths

  806869 - Assigned to Alexis Ballier
• sci-libs/rtabmap-0.20.13-r1: librtabmap_gui.so.0.20.13: undefined reference to `pcl::visualization::PCLVisualizer::removeCoordinateSystem(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)'

  808785 - Assigned to Alexis Ballier
• sci-libs/profnet-1.0.22 installs files with broken symlink

  809734 - Assigned to Gentoo Science Biology related packages
• sci-libs/fftw-3.3.9 - configure: error: could not find mpi library for --enable-mpi

  810052 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 installs modules that are not byte-compiled

  810259 - Assigned to Gentoo Science Related Packages
• sci-libs/rocPRIM-4.3.0 fails tests

  810649 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-4.3.0 fails tests

  810700 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.1.3-r4 does not respect CFLAGS/LDFLAGS

  810721 - Assigned to Gentoo Science Related Packages
• sci-libs/cgnslib-3.4.0 - CMake Error at CMakeLists.txt:210 (add_executable):

  813471 - Assigned to Gentoo Science Related Packages
• sci-libs/lis-1.6.5 - Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(8)).

  814338 - Assigned to Gentoo Science Related Packages
• sci-libs/ginkgo-1.4.0 - configure fails: Could not find a package configuration file provided by "hipblas"

  814845 - Assigned to Matthias Maier
• sci-libs/adolc-2.7.2 - ampisupport.cpp: error: struct ADTOOL_AMPI_FPCollection has no member named push_CallCodeReserve_f

  815007 - Assigned to Gentoo Science Related Packages
• sci-libs/libqalculate-4.1.1 calls cc directly

  815514 - Assigned to Gentoo Science Related Packages
• sci-libs/rocSPARSE-4.3.0-r1 fails tests

  817416 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.12.1-r1 does not respect CFLAGS

  817770 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 fails tests

  821565 - Assigned to Gentoo Science Related Packages
• =sci-libs/orocos_kdl-1.5.1 USE=models - error: ‘ifstream’ was not declared in this scope; did you mean ‘std::ifstream’?

  821613 - Assigned to Alexis Ballier
• sci-libs/dcmtk-3.6.5 - /.../syncpub.h: error: invalid conversion from int to dcmtk::log4cplus::thread::MutexImplBase [-fpermissive

  822171 - Assigned to Gentoo Science Biology related packages
• sci-libs/spqr-2.0.9-r1 - spqr_parallel.cpp: fatal error: tbb/task_scheduler_init.h: No such file or directory

  825514 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.7.4: nc_test fails when optimization level is -O2

  827042 - Assigned to Gentoo Science Related Packages
• sci-libs/libxc-5.1.6: fails tests

  827334 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl-2020.4.304: INTEL MKL ERROR: /usr/lib64/libmkl_vml_def.so: undefined symbol: mkl_lapack_dspevd.

  828021 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh: bundles dev-cpp/picojson

  828029 - Assigned to Matthias Maier
• sci-libs/flann[cuda] fails to compile

  829080 - Assigned to Paul Zander
• sci-libs/dealii-9.5.2-r1 installs files into unexpected paths

  829143 - Assigned to Matthias Maier
• sci-libs/matio-1.5.23 - getopt_long.c: fatal error: sys/cdefs.h: No such file or directory

  829197 - Assigned to Gentoo musl team
• sci-libs/ignition-math-6.8.0 - CMake Error at .../FAKE_INSTALL-build-RelWithDebInfo.cmake:49 (message):

  829273 - Assigned to Gentoo musl team
• sci-libs/suitesparse to 5.10.1 (and related) version bump request (5.4.0 is blocking cleanup of sci-libs/cholmod-3.0.13)

  829502 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 - main.cpp: error: f_main was not declared in this scope

  829620 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.3.1 - ncAtt.cpp:(.text+<snip>): undefined reference to nc_inq_attlen

  829795 - Assigned to Gentoo Science Related Packages
• sci-libs/ignition-fuel-tools-4.4.0 fails to compile: zip.h:285:11: error: expected ‘; at end of member declaration

  829952 - Assigned to Alexis Ballier
• sci-libs/adolc-2.7.2 - configure: error: in /.../ADOL-C-releases-2.7.2:

  830093 - Assigned to Gentoo Science Related Packages
• sci-libs/scikit-image-0.19.3-r1 installs pre-stripped files

  830238 - Assigned to Gentoo Science Related Packages
• sci-libs/flann-1.9.1-r4: Fails in cmake, CMake Error at src/matlab/CMakeLists.txt:19 (get_property):

  830424 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.4.0-r3 - /.../Kokkos_Stacktrace.cpp: fatal error: execinfo.h: No such file or directory

  830687 - Assigned to Gentoo musl team
• sci-libs/netcdf-4.8.1-r1 fails to compile: zip.h:285:21: error: expected :, ,, ;, } or __attribute__ before str

  830895 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-5.8.0 - ERROR: F2003 interface is not compatible with 32-bit indicies

  831110 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4-r1 - checking if .../javac failed (see config.log, check the CLASSPATH?)

  831367 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4 - QA Notice: Unrecognized configure options: --with-mumps-incdir, --with-mumps-lib

  831368 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.5.2-r3 fails to compile: zip.h:285:21: error: expected :, ,, ;, } or __attribute__ before str

  831570 - Assigned to Embedded Gentoo Team
• sci-libs/coinor-alps-1.5.7 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831681 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcps-0.94.5 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831682 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-blis-0.94.8 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831683 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dip-0.95.0-r2 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831684 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-flopcpp-1.2.5 fails to compile: MP_set.hpp:212:9: error: no matching conversion for functional-style cast from const flopc::SUBSETREF to flopc::MP_domain

  831685 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 fails to compile: ld.lld: error: cannot find linker script P

  831686 - Assigned to Gentoo Science Related Packages
• sci-libs/dealii-9.3.1-r4 fails to compile: llvm issue?

  831723 - Assigned to Matthias Maier
• sci-libs/eccodes-2.18.0 fails to compile: ld.lld: error: libeccodes.so: undefined reference to omp_init_nest_lock [--no-allow-shlib-undefined]

  831724 - Assigned to No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
• sci-libs/hdf-4.2.15-r1 fails to compile: ld.lld: error: cant create dynamic relocation R_X86_64_32 against local symbol in readonly segment; recompile object files with -fPIC or pass -Wl,-z,notext to allow text relocations in the output

  831725 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.23 fails to link with LLD because of /usr/lib in the link command line

  831799 - Assigned to Gentoo Science Related Packages
• sci-libs/avogadrolibs-1.93.0 USE=vtk - fatal error: QVTKOpenGLWidget.h: No such file or directory

  832528 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/clblas-2.12-r2 fails to compile: fileio.h:44:9: error: unknown type name u_int64_t

  832788 - Assigned to Gentoo Science Related Packages
• sci-libs/ignition-common-3.14.2 fails to compile: Remotery.c:2327:5: error: unknown type name fd_set

  832790 - Assigned to Alexis Ballier
• sci-libs/libdap-3.20.9 fails to compile: configure: error: Cannot determine DODS XDR integer sizes

  832791 - Assigned to Sci-geo Project
• sci-libs/taucs-2.2-r1 fails to compile: make: No rule to make target linux-musl_shared.mk

  832812 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.8.1-r1 - fails Test #183: nczarr_test_run_ut_mapapi

  832873 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1 fails tests

  833789 - Assigned to Gentoo Science Related Packages
• sci-libs/dmlc-core-0_p20170719-r1 fails to compile: ld: cannot find -ldmlc

  834144 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/orocos-bfl-0.8.0 fails to compile: ! LaTeX Error: File subfigure.sty not found

  834331 - Assigned to Alexis Ballier
• sci-libs/ViSP-3.5.0: version bump

  834466 - Assigned to Alexis Ballier
• sci-libs/ViSP-3.3.0-r1: fails to build with dev-games/ogre-1.12.9-r1

  834469 - Assigned to Alexis Ballier
• sci-libs/scotch-7.0.1-r1 - common_thread.h: error: unknown type name cpu_set_t

  834726 - Assigned to Gentoo musl team
• sci-libs/avogadrolibs-1.95.1 - /.../gl32.h: error: void _glewActiveTexture(GLenum) redeclared as different kind of entity

  834732 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/indilib-1.9.4 fails tests on x86

  834902 - Assigned to Gentoo KDE team
• sci-libs/flann-1.9.1-r5[octave] cannot find -loctinterp

  835021 - Assigned to Gentoo Science Related Packages
• =sci-libs/libigl-2.3.0[static-libs]: don't find Eigen/Core during build

  835094 - Assigned to 3D Printing Team
• sci-libs/coinor-cbc: uses variables banned in scope (VariableScope)

  836100 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl: uses variables banned in scope (VariableScope)

  836101 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp: uses variables banned in scope (VariableScope)

  836102 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp: uses variables banned in scope (VariableScope)

  836103 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi: uses variables banned in scope (VariableScope)

  836105 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils: uses variables banned in scope (VariableScope)

  836106 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol: uses variables banned in scope (VariableScope)

  836107 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt: uses variables banned in scope (VariableScope)

  836108 - Assigned to Gentoo Science Related Packages
• sci-libs/inchi-1.06-r1 fails to compile: ld: util.c:(.text+0x1b75): undefined reference to __isascii

  836860 - Assigned to Gentoo musl team
• sci-libs/netcdf-4.8.1-r1 - automagic dependency on dev-libs/libzip

  836910 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cppad-20210000.5-r1 fails tests on MUSL

  837014 - Assigned to Gentoo Science Related Packages
• sci-libs/kissfft-131.1.0 fails to compile: testcpp.cc:46:35: error: M_PIl was not declared in this scope; did you mean M_PI?

  837026 - Assigned to Gentoo Science Related Packages
• sci-libs/orocos_kdl-1.5.1 fails to compile: kinfamtest.cpp:143:50: error: uint was not declared in this scope; did you mean rint?

  837029 - Assigned to Alexis Ballier
• sci-libs/scalapack-2.1.0 fails tests on MUSL

  837035 - Assigned to Gentoo Science Related Packages
• sci-libs/p4est-2.8-r1 installs files into unexpected paths

  837044 - Assigned to Matthias Maier
• sci-libs/libgeotiff-1.7.1-r1 - listgeo.c:(<snip>) undefined reference to TIFFGetField

  837287 - Assigned to Sci-geo Project
• sci-libs/dealii-9.3.3 - CMake Error at .../macro_configure_feature.cmake:196 (MESSAGE):

  839495 - Assigned to Matthias Maier
• sci-libs/hipCUB-4.3.0-r1 fails to compile: hangs

  842144 - Assigned to Gentoo Science Related Packages
• sci-libs/hipCUB-5.0.2 fails tests

  842360 - Assigned to Gentoo Science Related Packages
• sci-libs/rocThrust-5.0.2 fails tests

  842363 - Assigned to Gentoo Science Related Packages
• sci-libs/hipSPARSE-5.0.2 calls ar directly

  842414 - Assigned to Gentoo Science Related Packages
• sci-libs/rocSPARSE-5.0.2 calls ar directly

  844907 - Assigned to Gentoo Science Related Packages
• sci-libs/hypre-2.21.0 provide pkgconf

  845312 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/ldl-2.2.6 installs libtool files (.la) without corresponding static libraries

  846695 - Assigned to Gentoo Science Related Packages
• sci-libs/libgeotiff-1.7.1-r1 - /.../xtiffio.h: fatal error: tiffio.h: No such file or directory

  846959 - Assigned to Sci-geo Project
• sci-libs/kissfft-131.1.0 add Provides to .pc file

  847472 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.10.5 installs libtool files (.la) without corresponding static libraries

  849704 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 installs libtool files (.la) without corresponding static libraries

  849707 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4 installs libtool files (.la) without corresponding static libraries

  849710 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 installs libtool files (.la) without corresponding static libraries

  849713 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.9 installs libtool files (.la) without corresponding static libraries

  849716 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 installs libtool files (.la) without corresponding static libraries

  849719 - Assigned to Gentoo Science Related Packages
• sci-libs/iml-1.0.5 installs libtool files (.la) without corresponding static libraries

  849926 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4-r1 installs libtool files (.la) without corresponding static libraries

  849929 - Assigned to Gentoo Science Related Packages
• sci-libs/superlu-4.3-r3 installs libtool files (.la) without corresponding static libraries

  849932 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.2-r301 installs libtool files (.la) without corresponding static libraries

  850940 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.8.1-r2 fails to compile on stable ppc: Could NOT find HDF5

  851660 - Assigned to Gentoo Science Related Packages
• sci-libs/symengine-0.12.0 - /.../sh:line <snip>: cd: .../doc: No such file or directory

  854594 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/ignition-common-3.14.0 fails to compile: Image.cc:161:8: error: memcpy is not a member of std

  857195 - Assigned to Alexis Ballier
• sci-libs/hdf5-1.10.5-r1 installs pre-stripped files

  862759 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.24 installs pkg-config files that do not respect libdir

  862948 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 - CglLandPUtils.hpp: error: invalid cast from type std::nullptr_t to type OsiRowCut

  865921 - Assigned to Gentoo musl team
• sci-libs/eccodes-2.26.0: version bump

  865923 - Assigned to No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
• sci-libs/avogadrolibs-1.97.0:0 - /.../spheregeometry.cpp: error: invalid cast from type std::nullptr_t to type const GLvoid {aka c

  866103 - Assigned to Gentoo musl team
• sci-libs/ignition-math-6.10.0:6/6 - Unknown CMake command python3_add_library.

  866317 - Assigned to Alexis Ballier
• sci-libs/gmsh-4.10.3 python bindings not found

  867520 - Assigned to Matthias Maier
• sci-libs/avogadrolibs: drop dependency to sci-chemistry/molequeue

  869206 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/pcl-1.12.1-r2 - /.../sparse_matrix.hpp: error: member reference base type MatrixEntry<T> is not a structure or union

  871435 - Assigned to Alexis Ballier
• sci-libs/rocPRIM-5.1.3 one or more CMake variables were not used by the project

  872314 - Assigned to Gentoo Science Related Packages
• sci-libs/rocThrust-5.1.3 one or more CMake variables were not used by the project

  872317 - Assigned to Gentoo Science Related Packages
• sci-libs/torchvision-0.11.2::science uses wrong include dir for pytorch headers, doesn't build CPU target objects but tries to link them, and picks wrong lib dir

  873055 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 fails tests (MUSL): OsiTestSolverInterfaceIO.cpp:425:22: error: invalid cast from type std::nullptr_t to type const char

  873259 - Assigned to Gentoo Science Related Packages
• sci-libs/dcmtk-3.6.7-r1 installs pkg-config files that fail validation

  873268 - Assigned to Gentoo Science Biology related packages
• sci-libs/dlib-19.24 fails tests (MUSL): new_allocator.h:158:33: error: void operator delete(void, std::size_t) called on pointer <unknown> with nonzero offset [8, 9223372036854775800] [-Werror=free-nonheap-object]

  873301 - Assigned to Gentoo Science Related Packages
• sci-libs/eccodes-2.18.0 fails tests (MUSL)

  873304 - Assigned to No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
• sci-libs/fcl-0.6.1-r1 calls commands that do not exist: epstopdf

  873313 - Assigned to Alexis Ballier
• sci-libs/gts-20121130 installs gtk-doc into unexpected paths

  873316 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.6.0-r5 fails to compile (MUSL): ! LaTeX Error: File wrapfig.sty not found

  873409 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.1.0-r2 fails to compile (MUSL): loguru.cpp:98:18: fatal error: execinfo.h: No such file or directory

  873601 - Assigned to Gentoo Science Related Packages
• sci-libs/pgplot-5.2.2-r8 - ./.../pgdisp.c: error: call to undeclared function initlock; ISO C99

  875437 - Assigned to Gentoo Science Related Packages
• sci-libs/silo-4.11.1-r1 installs libtool files (.la) without corresponding static libraries

  877387 - Assigned to Gentoo Cluster Team
• sci-libs/djbfft-0.76-r3 - 8mr.c: error: call to undeclared function fftc8_mul; ISO C99 and later do not support implicit function

  881017 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0-r1 installs more files with FEATURES=test

  881059 - Assigned to Gentoo Science Related Packages
• sci-libs/ogdi-4.1.0-r1 - /.../ld: cannot find -logdi: No such file or directory

  881083 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 fails to compile: xconfig: config.c:602: ProbeOS: Assertion iret failed

  882009 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.1.0-r4 fails to compile on ppc

  882405 - Assigned to Gentoo Science Related Packages
• sci-libs/metis-5.1.0-r5 installs files that contain insecure RUNPATHs

  882663 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl-2023.1.0.46342 installs files with unresolved SONAME dependencies

  885361 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 fails to compile (CLANG-STRICTER-SYSTEM): ATLrun.sh: line 4: 310 Segmentation fault $

  886063 - Assigned to Gentoo Science Related Packages
• sci-libs/gerris-20131206-r1 fails to compile (CLANG-STRICTER-SYSTEM): Pointers cannot be stored in doubles on this architecture

  886277 - Assigned to Gentoo Science Related Packages
• sci-libs/kim-api-2.2.1 installs pkg-config files that do not respect libdir

  886281 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.2.2-r1 overwrites user's optimization (-O*)

  886317 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.6.1[python] ignores PYTHON_SINGLE_TARGET

  886367 - Assigned to Sci-geo Project
• sci-libs/libxc-5.1.7 fails to compile (CLANG-STRICTER-SYSTEM): libtool.m4: error: problem compiling FC test program

  886456 - Assigned to Gentoo Science Related Packages
• sci-libs/mc-1.5 fails to compile (CLANG-STRICTER-SYSTEM): estim.c:714:18: error: call to undeclared function Aprx_markRefineDorfler; ISO C99 and later do not support implicit function declarations [-Werror,-Wimplicit-function-declaration]

  886457 - Assigned to Gentoo Science Related Packages
• sci-libs/miopen-5.1.3-r1 fails to compile (CLANG-STRICTER-SYSTEM): clang-15: error: unable to execute command: Segmentation fault

  886458 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.5.4 fails to compile (CLANG-STRICTER-SYSTEM): configure: error: Fortran could not compile .f90 files

  886459 - Assigned to Gentoo Science Related Packages
• sci-libs/punc-1.5 fails to compile (CLANG-STRICTER-SYSTEM): main.c:115:1: error: type specifier missing, defaults to int; ISO C99 and later do not support implicit int [-Werror,-Wimplicit-int]

  886461 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.23 fails to compile (CLANG-STRICTER-SYSTEM): configure: error: Fortran does not accept free-form source

  886462 - Assigned to Gentoo Science Related Packages
• sci-libs/qfits-6.2.0 fails to compile (CLANG-STRICTER-SYSTEM): qextract.c:69:14: error: call to undeclared function qfits_query_n_ext; ISO C99 and later do not support implicit function declarations [-Werror,-Wimplicit-function-declaration]

  886463 - Assigned to Gentoo Astronomy project
• sci-libs/silo-4.11-r1 fails to compile (CLANG-STRICTER-SYSTEM): silo_hdf5.c:1869:13: error: incompatible integer to pointer conversion passing char to parameter of type const char ; take the address with & [-Wint-conversion]

  886464 - Assigned to Gentoo Cluster Team
• sci-libs/superlu_mt-3.1-r1 fails to compile (CLANG-STRICTER-SYSTEM): psgssvx.c:580:2: error: call to undeclared function sp_colorder; ISO C99 and later do not support implicit function declarations [-Werror,-Wimplicit-function-declaration]

  886466 - Assigned to Gentoo Science Related Packages
• sci-libs/taucs-2.2-r1 fails to compile (CLANG-STRICTER-SYSTEM): taucs_blas_nounderscore_test.c:(.text+0xa8): undefined reference to dgemm

  886467 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.5.3: invalid libdir in pkgconfig file on 64 bits system

  887735 - Assigned to Sci-geo Project
• sci-libs/getdata-0.11.0 fails to compile (DASH-SYSTEM): ld: libgetdata.so: undefined reference to gd_coladd

  890429 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap-1.9.8 adds -Werror flag on its own

  890433 - Assigned to Alexis Ballier
• sci-libs/rocPRIM-5.1.3 installs files into unexpected paths

  890435 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl-2023.1.0.46342 installs '.a' files without static-libs USE

  890461 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap-1.9.8 installs '.a' files without static-libs USE

  890489 - Assigned to Alexis Ballier
• sci-libs/nemesis-6.09 fails tests (DASH-SYSTEM): testing global init info output...ne_test: H5CS.c:224: H5CS_pop: Assertion fstack->nused > 0 failed

  890501 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.5.4 fails tests (DASH-SYSTEM): FAIL: tst_fill_int64

  890503 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.5.2 fails to compile (DASH-SYSTEM): configure: 16116: Bad substitution

  890505 - Assigned to Gentoo Science Related Packages
• sci-libs/arpack-3.8.0 - configure: error: could not compile a Fortran MPI test program

  890511 - Assigned to Gentoo Science Related Packages
• sci-libs/pdal-2.5.0 fails tests: 38 - pdal_io_ogr_writer_test (SEGFAULT)

  891449 - Assigned to Thomas Bettler
• sci-libs/atlas-3.10.2 fails to compile (USR-MERGE-SYSTEM): error: inlining failed in call to ‘always_inline’ ‘_mm256_sub_*’: target specific option mismatch

  891739 - Assigned to Gentoo Science Related Packages
• sci-libs/libaec-1.0.6 installs '.a' files without static-libs USE (USR-MERGE-SYSTEM)

  891897 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-6.5.0 fails to compile: f951: Fatal Error: Cannot rename module file test_utilities.mod0 to test_utilities.mod: No such file or directory

  892587 - Assigned to Gentoo Science Related Packages
• sci-libs/miopen: installs incomplate AMDGPU_TARGETS

  893242 - Assigned to Gentoo Science Related Packages
• sci-libs/cantera-2.6.0-r2 fails tests (LIBARCHIVE-SYSTEM): ...............Fatal Python error: Aborted

  894036 - Assigned to Sergey Torokhov
• sci-libs/rocSPARSE-5.1.3 fails to compile (LIBARCHIVE-SYSTEM): multilib-strict check failed!

  894042 - Assigned to Gentoo Science Related Packages
• sci-libs/miopen-5.1.3-r1 one or more CMake variables were not used by the project (LIBARCHIVE-SYSTEM)

  894056 - Assigned to Gentoo Science Related Packages
• sci-libs/symengine-0.11.1 fails to compile (MUSL-CLANG-SYSTEM): Could NOT find EXECINFO (missing: EXECINFO_INCLUDE_DIRS)

  895512 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/coinor-dip-0.95.0-r2 fails tests (HARDENED-SYSTEM)

  896408 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.1.3-r2 installs unrecognized ELF file (HARDENED-SYSTEM)

  897784 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.4 fails to compile (MUSL-CLANG-SYSTEM): CoinOslC.h:37:15: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898126 - Assigned to Gentoo Science Related Packages
• sci-libs/volk-2.5.1 has implicit function declarations in configure logs

  898260 - Assigned to Rick Farina (Zero_Chaos)
• sci-libs/trilinos-13.4.1 fails to compile (MUSL-CLANG-SYSTEM): trilinos_klu_factor.c:506:19: error: call to undeclared function omp_get_num_threads; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

  898272 - Assigned to Matthias Maier
• sci-libs/gmsh-4.10.3 fails to compile (MUSL-CLANG-SYSTEM): edgegen.c:1680:18: error: call to undeclared library function strlen with type unsigned long (const char ); ISO C99 and later do not support implicit function declarations [-Wimplicit-function-de

  898280 - Assigned to Matthias Maier
• sci-libs/hdf5-1.10.5-r1 fails to compile (MUSL-CLANG-SYSTEM): H5Odeprec.c:141:8: error: call to undeclared function H5CX_set_apl; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

  898282 - Assigned to Gentoo Science Related Packages
• sci-libs/itpp-4.3.1-r2 fails to compile (MUSL-CLANG-SYSTEM): siso.h:668:5: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898284 - Assigned to Gentoo Science Related Packages
• sci-libs/spr-3.3.2 fails to compile (MUSL-CLANG-SYSTEM): SprSymMatrix.cc:198:4: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898292 - Assigned to Gentoo Science Physics related packages
• sci-libs/taucs-2.2-r1 fails to compile (MUSL-CLANG-SYSTEM): taucs_config.c:244:5: error: call to undeclared function 'mkdir'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

  898294 - Assigned to Gentoo Science Related Packages
• sci-libs/taucs-2.2-r1 does not respect CFLAGS (MUSL-CLANG-SYSTEM)

  898296 - Assigned to Gentoo Science Related Packages
• sci-libs/rocSPARSE-5.1.3-r1 installs files into unexpected paths

  898976 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.10.5 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900561 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900563 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp-1.17.6-r1 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900565 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4-r1 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900567 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900569 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.9 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900571 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900573 - Assigned to Gentoo Science Related Packages
• sci-libs/buddy-2.4-r1 has implicit function declarations in configure logs (MUSL-CLANG-SYSTEM)

  900695 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.3.1-r1 fails tests

  901269 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 fails to compile: error: tag HTML_FOOTER: footer file footer.html does not exist

  901271 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2[doc]: failed to emerge

  901395 - Assigned to Gentoo Science Related Packages
• >=sci-libs/armadillo-11.4.0 - fails 26 tests (eigs_gen(): use of ARPACK must be enabled for decomposition of complex matrices) despite +arpack

  902451 - Assigned to Andreas K. Hüttel
• sci-libs/clfft-2.12.2-r1::science riscv support

  904492 - Assigned to Gentoo Science Related Packages
• sci-libs/rocThrust-5.1.3 includes are installed in the wrong folder

  905291 - Assigned to Gentoo Science Related Packages
• sci-libs/cgnslib-4.4.0-r2 has implicit function declarations in configure logs

  905680 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.4.2-r3 fails to compile

  908220 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcp-1.4.4 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908309 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-flopcpp-1.2.5 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908310 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-netlib-1.2.9 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908311 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-smi-0.96.1 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908312 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.5.2-r5 installs more files with FEATURES=test

  908392 - Assigned to Embedded Gentoo Team
• sci-libs/dcmtk-3.6.7-r1 fails to compile (MUSL-SYSTEM): offile.h:359:16: error: ::fopen64 has not been declared

  908398 - Assigned to Gentoo Science Biology related packages
• sci-libs/ignition-common-3.14.2 failed in compile - .../gz-common-ignition-common3_3.14.2/profiler/src/ProfilerImpl.hh:56:59: error: ‘uint32_t’ has not been declared

  908410 - Assigned to Alexis Ballier
• sci-libs/linux-gpib-4.3.5 fails to compile (MUSL-SYSTEM): ibutil.c:103:38: error: PTHREAD_ADAPTIVE_MUTEX_INITIALIZER_NP undeclared here (not in a function)

  908448 - Assigned to Andreas K. Hüttel
• sci-libs/nfft-3.5.2 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908450 - Assigned to Gentoo Science Related Packages
• sci-libs/qfits-6.2.0 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908483 - Assigned to Gentoo Astronomy project
• sci-libs/silo-4.11-r1 fails to compile (MUSL-SYSTEM): H5FDsilo.c:544:5: error: initializer element is not computable at load time

  908484 - Assigned to Gentoo Cluster Team
• =sci-libs/trilinos-14.0.0: optimization CXXFLAGS not respected

  908835 - Assigned to Matthias Maier
• sci-libs/suitesparseconfig-7.0.0: fails to configure (Could NOT find BLAS (missing: BLAS_LIBRARIES)

  908851 - Assigned to Gentoo Science Related Packages
• sci-libs/cholmod-4.0.3 installs '.a' files without static-libs USE

  908858 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-3.0.3 installs '.a' files without static-libs USE

  908859 - Assigned to Gentoo Science Related Packages
• sci-libs/avogadrolibs-1.97.0 failed to emerge with USE=vtk - Targets not yet defined

  909437 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/parmetis-4.0.3_p20230326-r1: fails to compile

  910508 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2 - error: source .../internal.md is not a readable file or directory..kipping.

  912666 - Assigned to Gentoo Science Related Packages
• sci-libs/rocSOLVER-5.4.2 fails to compile (GLIBC-2.38-SYSTEM): x86_64-pc-linux-gnu-ld.bfd: libamdhip64.so.5.4: undefined reference to hsa_executable_load_agent_code_object@ROCR_1

  913369 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.1.3-r4 installs files into unexpected paths (GLIBC-2.38-SYSTEM)

  913371 - Assigned to Gentoo Science Related Packages
• sci-libs/fftw: Should install FFTW3LibraryDepends.cmake

  913518 - Assigned to Gentoo Science Related Packages
• sci-libs/scikit-image-0.19.3-r1 is missing dependency on dev-python/pythran

  913686 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.11 fails to build with samurai

  914429 - Assigned to Gentoo Science Related Packages
• sci-libs/dlib-19.24.2: DISTUTILS_EXT=1 missing and QA notice

  916526 - Assigned to Gentoo Science Related Packages
• sci-libs/rocFFT-5.1.3 crashes.

  917473 - Assigned to Gentoo Science Related Packages
• sci-libs/scikit-learn-1.3.2-r1 - sklearn/.../_dist_metrics.c: error: passing argument 1 of _pyx_f_7sklearn_7metrics_13_dist_metrics_19EuclideanDistanc

  919261 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 - [clang] ./VolVolume.hpp: error: ISO C++17 does not allow register storage class

  919381 - Assigned to Gentoo Science Related Packages
• sci-libs/hipFFT-5.7.1-r1: CMake Error at /usr/lib64/cmake/hip/FindHIP.cmake:105 (message): Specify HIP_ROOT_DIR

  919705 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0 fails to build with clang-17 and lto enabled

  919740 - Assigned to Gentoo Science Related Packages
• sci-libs/clblast is not tuned in the build process even if package name claims to be "tuned" blas

  919750 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 - [clang] OsiSolverInterfaceTest.cpp: error: no member named bind2nd in

  919825 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r1: TypeError: buildSourceCodeObjectFile() missing 2 required positional arguments: 'outputPath' and 'kernelFile'

  920554 - Assigned to Gentoo Science Related Packages
• sci-libs/suitesparse does not packages RBio

  921100 - Assigned to Gentoo Science Related Packages
• sci-libs/plplot-5.15.0_p6 - emake failed

  921146 - Assigned to Gentoo Science Related Packages
• sci-libs/mathgl-8.0.1-r1 fails to compile (GCC-14-SYSTEM): i:110: ==> Fatal error occurred, no output PDF file produced!

  921350 - Assigned to Gentoo Science Related Packages
• sci-libs/pcl: cuda should be build with supported compiler

  921582 - Assigned to Alexis Ballier
• sci-libs/geos-3.11.2: fails tests

  921956 - Assigned to Sci-geo Project
• sci-libs/rocFFT-5.7.1-r1 fails to compile /usr/include/c++/v1/deque:436:67: error: expected ')'

  922069 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r1 FAILED: Tensile/lib/CMakeFiles/TensileHost.dir/source/hip/HipSolutionAdapter.cpp.o /usr/include/c++/v1/deque:436:67: error: expected ')'

  922071 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2 installs pkg-config files that do not respect libdir

  924363 - Assigned to Gentoo Science Related Packages
• sci-libs/rocSPARSE-5.7.1-r1 - CMake Error at clients/cmake_install.cmake:46 (file): file INSTALL cannot find rocsparse_common.yaml

  924446 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.8.0: CMake Error at cmake/helpers/CheckDependentLibraries.cmake:202 (message): Configured to use ORACLE, but not found

  924675 - Assigned to Sci-geo Project
• sci-libs/p4est-2.8.5-r3 fails to compile: mv failed

  924972 - Assigned to Matthias Maier
• sci-libs/scikit-learn-1.3.2-r1 fails tests

  924973 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.1-r1 one or more CMake variables were not used by the project

  925072 - Assigned to Sci-geo Project
• sci-libs/rocBLAS-5.7.1-r1: 40G build size

  925087 - Assigned to Gentoo Science Related Packages
• sci-libs/openblas-0.3.25-r1 fails to build on ppc: ../kernel/power/gemm_tcopy_4.S:164: Error: invalid operands (*UND* and *ABS* sections) for `*'

  925114 - Assigned to Gentoo Science Related Packages
• sci-libs/openlibm-0.8.3 fails to compile: make: No rule to make target Make.files

  925166 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.1-r1 problems with installed bash completions

  925307 - Assigned to Sci-geo Project
• sci-libs/sundials[fortran]: fails to compile w/ read-only segment has dynamic relocations

  925552 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2 fails to compile: semantics.c:605:60: error: passing argument 2 of ncaux_class_alignment from incompatible pointer type [-Wincompatible-pointer-types]

  925853 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 fails to compile: fft3.cpp:69:3: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  926266 - Assigned to Gentoo Science Related Packages
• sci-libs/buddy-2.4-r1 fails to compile: lexer.cxx:623:2: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  926267 - Assigned to Gentoo Science Related Packages
• sci-libs/superlu-4.3-r3 fails to compile: sp_ienv.c:75:5: error: call to undeclared function xerbla_; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

  926310 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5-r1 fails to compile: expr: syntax error: unexpected argument 1000000

  926311 - Assigned to Gentoo Science Related Packages
• sci-libs/ignition-math-6.15.1 fails tests: 113 - INTEGRATION_versioned_symbols (Failed)

  926312 - Assigned to Alexis Ballier
• sci-libs/levmar-2.6-r1 fails tests: lmdemo: symbol lookup error: liblevmar.so: undefined symbol: dsytrf_

  926313 - Assigned to Amy Liffey
• sci-libs/linux-gpib-modules-4.3.5-r3 fails to compile: gpib_bitbang.c:1073:27: error: a function declaration without a prototype is deprecated in all versions of C [-Werror,-Wstrict-prototypes]

  926314 - Assigned to Andreas K. Hüttel
• sci-libs/kim-api-2.2.1 problems with installed bash completions

  926316 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-couenne-0.5.8-r1 fails to compile: dsyevx_wrapper.cpp:(.text+0x177): undefined reference to dsyev_

  926334 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 fails tests: make: [Makefile:510: test] Segmentation fault

  926335 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 installs pkg-config files that do not respect libdir

  926336 - Assigned to Gentoo Science Related Packages
• sci-libs/avogadrolibs-1.99.0 version bump and switch to Qt6

  926352 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/nfft-3.5.2 fails to compile: ld: libfastsum_threads.a(libfastsum_threads_la-fastsum.o): undefined reference to symbol omp_get_num_threads@@OMP_1.0

  926457 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.1-r1 installs deprecated .egg/.egg-info

  926500 - Assigned to Sci-geo Project
• sci-libs/openblas-0.3.26 installs files that contain writable and executable sections

  926649 - Assigned to Gentoo Science Related Packages
• sci-libs/openblas-0.3.26 fails tests (hang)

  926759 - Assigned to Gentoo Science Related Packages
• sci-libs/silo-4.11.1 fails tests

  927189 - Assigned to Gentoo Cluster Team
• sci-libs/exodusii-6.09-r1 fails tests: 1 - ExoIICTests (Failed)

  927584 - Assigned to Gentoo Science Related Packages
• sci-libs/mumps-5.3.5-r1: won't compile with USE=mpi if openmpi doesn't have USE=fortran

  927635 - Assigned to Gentoo Science Related Packages
• sci-libs/htslib-1.17 has implicit function declarations in configure logs

  927873 - Assigned to Gentoo Science Biology related packages
• sci-libs/trilinos-15.0.0 fails to compile: Tpetra_Distributor.hpp:829:34: error: static assertion failed: Tpetra::Distributor::computeSends: sizeof(size_t) < sizeof(OrdinalType)

  928017 - Assigned to Matthias Maier
• sci-libs/dmlc-core-0.5 fails to compile: recordio_test.cc:32:24: error: no matching function for call to max(std::__cxx11::basic_string<char>::size_type, long unsigned int)

  928019 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/coinor-alps-1.5.7 has implicit function declarations in configure logs

  928021 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcps-0.94.5 has implicit function declarations in configure logs

  928022 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-blis-0.94.8 has implicit function declarations in configure logs

  928023 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bonmin-1.8.8 has implicit function declarations in configure logs

  928024 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-couenne-0.5.8-r1 has implicit function declarations in configure logs

  928025 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dip-0.95.0-r2 has implicit function declarations in configure logs

  928026 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 has implicit function declarations in configure logs

  928027 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 has implicit function declarations in configure logs

  928029 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.9.0 fails tests

  928048 - Assigned to Gentoo Science Related Packages
• sci-libs/numkit-1.2.3 fails tests: ImportError: cannot import name Tester from numpy.testing __init__.py)

  928054 - Assigned to Alexey Shvetsov
• sci-libs/pastix-6.0.3 fails to compile: Could NOT find CBLAS (missing: CBLAS_WORKS)

  928057 - Assigned to Gentoo Science Related Packages
• sci-libs/volk-3.1.0 fails tests: 108 - qa_volk_32fc_x2_conjugate_dot_prod_32fc (Failed)

  928092 - Assigned to Rick Farina (Zero_Chaos)
• sci-libs/vtk: fails tests with: Loguru caught a signal: SIGFPE

  928127 - Assigned to Paul Zander
• sci-libs/lapack-3.12.0-r1[eselect-ldso] and sci-libs/openblas-0.3.26[eselect-ldso] do not install properly breaking "Blas-lapack-switch"

  928506 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap-1.9.8 fails to compile: OcTreeBase.h:46:21: error: template-id not allowed for constructor in C++20 [-Werror=template-id-cdtor]

  928853 - Assigned to Alexis Ballier
• sci-libs/hdf: update to hdf 4.3.0

  928910 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9-r4 - failed to emerge with USE=doc

  929098 - Assigned to Gentoo Science Related Packages
• sci-libs/eccodes: needs upgrade to Python 3.12 (PythonCompatUpdate)

  929772 - Assigned to No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
• sci-libs/numkit: needs upgrade to Python 3.12 (PythonCompatUpdate)

  929784 - Assigned to Alexey Shvetsov
• sci-libs/plplot: needs upgrade to Python 3.12 (PythonCompatUpdate)

  929786 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.14.4_p2 - No such file or directory

  930143 - Assigned to Gentoo Science Related Packages
• sci-libs/orocos_kdl-1.5.1 USE=examples fails to compile: boost/timer.hpp header deprecated

  930523 - Assigned to Alexis Ballier
• sci-libs/vtk fails to compile missing dependency dev-libs/c-blosc

  930711 - Assigned to Paul Zander
• sci-libs/atlas-3.10.2 Make.top:1: Make.inc: No such file or directory

  930954 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r2: error: option 'cf-protection=return' and 'cf-protection=branch' cannot be specified on this target

  931093 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r2 fails with IndexError: list index out of range

  931674 - Assigned to Gentoo Science Related Packages
• sci-libs/rccl and sci-libs/composable-kernel does not respect amdgpu_flags

  932188 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.3.0[cuda] huge RAM requirements for compilation

  932464 - Assigned to Paul Zander
• sci-libs/plplot-5.15.0_p6-r1 - [gcc-15] /.../_multiarray_api.h: fatal error: numpy/_public_dtype_api_table.h: No such file or directory

  932642 - Assigned to Gentoo Science Related Packages
• sci-libs/cgnslib-4.4.0-r1 - failed to emerge - mode MATCH needs at least 5 arguments

  933087 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2-r1 fails tests on ppc64 big-endian

  933141 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 one or more CMake variables were not used by the project

  934031 - Assigned to Matthias Maier
• sci-libs/blis-1.0 fails tests on arm: libblis: Invalid architecture id value.

  934524 - Assigned to
• sci-libs/rocWMMA-6.1.1 fails to compile

  934980 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-6.1.1 fails to compile

  935047 - Assigned to Gentoo Science Related Packages
• sci-libs/plplot-5.15.0_p6-r1: setup-wxwidgets should be called from src_configure

  935483 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.0 - add missing USE=shp or USE=shapelib

  935567 - Assigned to Sci-geo Project
• sci-libs/armadillo-12.8.2 fails with multiple const class arma::Col<eT>::fixed<fixed_n_elem>’ has no member named ...

  936508 - Assigned to Andreas K. Hüttel
• sci-libs/atlas-3.11.41 fails to compile: probe_arch.c:201:33: error: passing argument 1 of strlen from incompatible pointer type [-Wincompatible-pointer-types]

  936672 - Assigned to Paul Zander
• sci-libs/atlas-3.11.41 - gcc: error: unrecognized command-line option ‘-V’

  936680 - Assigned to Gentoo Science Related Packages
• sci-libs/dcmtk-3.6.8 fails to builld with gcc:15 : error: ‘const struct OFrvalue_storage<T, <anonymous> >’ has no member named ‘pt’

  936681 - Assigned to Gentoo Science Biology related packages
• sci-libs/gdal-3.9.0 fails compiling armadillo test/check with =sci-libs/armadillo-12.8.2

  936846 - Assigned to Sci-geo Project
• sci-libs/pcl-1.14.0: stable boost rebuild failure

  937052 - Assigned to Alexis Ballier
• sci-libs/getdata-0.11.0-r2 fails tests: FAIL: error_verbose_prefix

  937248 - Assigned to Gentoo Science Related Packages
• sci-libs/stellarsolver-2.6 fails to compile: os-features.h:113:6: error: conflicting types for qsort_r; have void(void , size_t, size_t, void , int ()(void , const void , const void )) {aka void(void , long unsigned int, long unsigned int, void , int ()(

  937322 - Assigned to Gentoo KDE team
• sci-libs/pdal-2.7.2 fails to build with gcc:15 (error: ‘class xxx has no member named ...)

  937597 - Assigned to Thomas Bettler
• sci-libs/ignition-*: treeclean request

  937608 - Assigned to Alexis Ballier
• sci-libs/spglib: 2.5.0 version bump

  937609 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/ViSP-3.5.0-r1 fails tests: 136 - testGenericTracker-edge-scanline (Failed)

  937707 - Assigned to Alexis Ballier
• sci-libs/djbfft-0.76-r3 - pre4.c: error: implicit declaration of function fftc4_mul

  938322 - Assigned to Gentoo musl team
• sci-libs/gdal-3.9.1 missing optional dependency on sci-libs/libaec

  938364 - Assigned to Sci-geo Project
• sci-libs/libcerf-1.17 installs pkg-config file with mismatched libdir (seen with sci-visualization/gnuplot-6.0.1)

  938472 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.9.0 fails to compile: memory.h:156:11: error: intptr_t does not name a type

  939020 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 fails to compile: gtest-all.cc:9037:26: error: uintptr_t does not name a type

  939068 - Assigned to Matthias Maier
• sci-libs/dlib-19.24.2 fails to compile: type_traits.h:103:68: error: uint8_t was not declared in this scope

  939094 - Assigned to Gentoo Science Related Packages
• sci-libs/indilib-2.1.0 fails to compile: tcpsocket.h:78:57: error: uint16_t has not been declared

  939098 - Assigned to Gentoo KDE team
• sci-libs/composable-kernel 6.1.1 ld error

  939362 - Assigned to Sv. Lockal
• sci-libs/libsigrok-0.5.2-r5 - [gcc-15] [slibtool] rdlibtool: error logged in slbt_exec_link_create_executable(), line 246: flow error: unexpected condition or other.

  939823 - Assigned to Embedded Gentoo Team
• sci-libs/opencascade-7.8.1 - invalid conversion from ‘unsigned char*’ to ‘const char*’

  939996 - Assigned to Paul Zander
• sci-libs/hdf-4.2.15-r2 fails to compile on loong: hdfi.h:1449:1: error: unknown type name 'No'

  940085 - Assigned to Gentoo Science Related Packages
• sci-libs/hipBLASt-6.1.1-r1: extend AMDGPU_TARGETS USE_EXPAND with gfx110*

  941182 - Assigned to Sv. Lockal
• sci-libs/blis-1.0 fails to compile: bli_x86_asm_macros.h:102:21: error: the register xmm15 cannot be clobbered in asm for the current target

  942061 - Assigned to
• sci-libs/coinor-bonmin-1.8.8 fails tests: Exception message: libhsl.so: cannot open shared object file: No such file or directory

  942062 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 fails to compile: sym_lp_solver.h:118:2: error: error Undefined or unknown LP solver

  942064 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 fails to compile: configure: error: Required package Cbc unavailable

  942068 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.24 uses automake in maintainer-mode

  942117 - Assigned to Gentoo Science Related Packages
• sci-libs/ginkgo-1.8.0 fails to compile: cc1plus: out of memory allocating 65536 bytes after a total of 967700480 bytes

  942119 - Assigned to Matthias Maier
• sci-libs/lemon-1.3.1-r2 fails to compile: ld: libClpSolver.so.1: undefined reference to f_read_ASL

  942120 - Assigned to Gentoo Science Related Packages
• sci-libs/p4est-2.8.6 fails tests

  942121 - Assigned to Matthias Maier
• sci-libs/blis-1.0 fails to compile: bli_gemmsup_rv_haswell_asm_d6x8m.c:1763:1: error: bp cannot be used in asm here

  942334 - Assigned to
• app-text/doxygen-1.12.0 heap overflow when compiling givaro docs - WAS: sci-libs/givaro-4.2.0 [doc] fails to compile: make: [Makefile:500: docs] Segmentation fault

  942336 - Assigned to Matthias Maier
• sci-libs/linbox-1.7.0-r1 fails to compile: blas-subvector.h:121:20: error: LinBox::BlasSubvector<_Vector>::Self_t has no member named data [-Wtemplate-body]

  942337 - Assigned to Michael Orlitzky
• sci-libs/avogadrolibs-1.97.0 - [gcc-15] /.../cp2kinputdialog.cpp: error: type Avogadro::QtPlugins::BasisOption violates the C++ One Definition Rule [-Werror=odr]

  942463 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/fftw-3.3.10 fails to compile: simd-neon.h:47:2: error: error compiling simd-neon.h requires -mfpu=neon or equivalent

  942588 - Assigned to Gentoo Science Related Packages
• sci-libs/datasets-2.20.0 fails tests

  942778 - Assigned to Tupone Alfredo
• sci-libs/opencascade-9999 (version 7.8.2) patches rebase

  942794 - Assigned to Paul Zander
• sci-libs/hdf-4.2.15-r2 fails to compile: xdrposix.c:304:5: error: initialization of int32_t ()(struct __rpc_xdr , u_int) {aka int ()(struct __rpc_xdr , unsigned int)} from incompatible pointer type netlong ()() {aka long int ()()} [-Wincompatible-pointer

  942866 - Assigned to Gentoo Science Related Packages
• sci-libs/QNNPACK: removal

  942972 - Assigned to Tupone Alfredo
• sci-libs/coinasl-2.0.1-r1 fails to compile: fgh_read.c:101:27: error: type of f2_HOL_ASL does not match original declaration [-Werror=lto-type-mismatch]

  943309 - Assigned to Andrew Udvare
• sci-libs/caffe2-2.5.1 fails to compile

  943505 - Assigned to Tupone Alfredo
• sci-libs/pytorch-2.5.1 fails to build

  943531 - Assigned to Tupone Alfredo
• sci-libs/pytorch-2.5.1: torchrun fails to run

  943551 - Assigned to Tupone Alfredo
• =sci-libs/ogdi-4.1.0-r1 fails with gcc-15.0.0_pre20241117: ../vpfselec.c:103:4: error: number of arguments doesn’t match prototype

  943714 - Assigned to Gentoo Science Related Packages
• =sci-libs/superlu-5.3.0 fails with c23/gcc-15.0.0_pre20241117: sreadtriple.c:137:16: error: conflicting types for ‘fopen’; have ‘FILE *(void)’

  943867 - Assigned to Gentoo Science Related Packages
• =sci-libs/med-4.1.1-r3 fails with c23/gcc-15.0.0_pre20241117: _MEDiterate.c:35:63: error: passing argument 5 of ‘H5Literate1’ from incompatible pointer type

  943874 - Assigned to Matthias Maier
• sci-libs/cfitsio-4.4.1 - [libtool] [gcc-15] /.../putcol.c: error: cptr undeclared (first use in this function)

  943959 - Assigned to Gentoo Astronomy project
• sci-libs/linux-gpib-modules-4.3.6::gentoo fails to compile with kernel 6.12.1 (compile phase) emake failed

  944714 - Assigned to Andreas K. Hüttel
• sci-libs/cfitsio-4.5.0 fails to compile: putcol.c:1229:24: error: expected identifier or ( before nullptr

  944747 - Assigned to Gentoo Astronomy project
• sci-libs/rocBLAS-6.1.1: 16 bit floats broken

  944820 - Assigned to Gentoo Science Related Packages
• sci-libs/tokenizers-0.20.1-r1 fails to compile: warning: onig_sys@69.8.1: st.c:56:43: error: too many arguments to function table->type->hash

  944852 - Assigned to Tupone Alfredo
• sci-libs/symmetrica-3.0.1-r1 fails to compile: boe.c:17:1: error: number of arguments doesnt match prototype

  944853 - Assigned to Michael Orlitzky
• sci-libs/superlu_mt-3.1-r1 fails to compile: psgssvx.c:415:19: error: conflicting types for slamch_; have double(char )

  944854 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1-r1 fails to compile: arch_sub.c:416:7: error: too many arguments to function ((Arch )orgarchptr)->class->matchInit

  944855 - Assigned to Gentoo Science Related Packages
• sci-libs/pgplot-5.2.2-r8 fails to compile: x2driv.c:192:25: error: too many arguments to function figdisp_sendcommand

  944857 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.5.2 fails to compile: radon.c:150:3: error: too many arguments to function gridfcn

  944858 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 fails to compile: Error: Type mismatch between actual argument at (1) and actual argument at (2) REAL(8))

  944859 - Assigned to Gentoo Science Related Packages
• sci-libs/med-4.1.1-r3 fails to compile: _MEDvisit.c:28:1: error: conflicting types for _MEDvisit; have med_err(const med_idt, const char const, const char const, herr_t ()(void)) {aka int(const long int, const char const, const char const, int ()(void))}

  944860 - Assigned to Matthias Maier
• sci-libs/libint-1.1.6 fails to compile: build_libint.c:70:5: error: too many arguments to function punt

  944861 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4-r1 fails to compile: dylib_std.h:67:16: error: two or more data types in declaration specifiers

  944862 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile: array.c:493:21: error: too many arguments to function xlen_funct

  944863 - Assigned to Gentoo Science Related Packages
• sci-libs/djbfft-0.76-r3 fails to compile: byte_copy.c:7:1: error: number of arguments doesnt match prototype

  944864 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-csdp-6.2.0 fails to compile: calc_dobj.c:28:9: error: too many arguments to function ddot_

  944865 - Assigned to Gentoo Science Related Packages
• sci-libs/clapack-3.2.1-r8 fails to compile: sgeesx.c:460:27: error: too many arguments to function select

  944866 - Assigned to Gentoo Science Related Packages
• sci-libs/djbfft-0.76-r3 fails to compile: strerr.h:61:1: error: too many arguments to function strerr_die

  945018 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1-r1 fails to compile: module.h:241:37: error: initialization of int ()(void) from incompatible pointer type int ()(ArchCmplt const restrict, FILE const restrict) {aka int ()(struct ArchCmplt_ const restrict, FILE const restrict)} [-W

  945019 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile: array.c:476:24: error: assignment to int ()(void) from incompatible pointer type int ()(NC_string ) [-Wincompatible-pointer-types]

  945045 - Assigned to Gentoo Science Related Packages
• sci-libs/plplot-5.15.0_p6-r1 - [libtool] [gcc-15] test-drv-info.c: error: passing argument 2 of signal from incompatible pointer type [-Wincompatible-pointer-types]

  945155 - Assigned to Gentoo Science Related Packages
• sci-libs/symengine: update to llvm-r1

  945348 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/caffe2-2.5.1-r3 fails to compile

  945391 - Assigned to Tupone Alfredo
• sci-libs/vtk-9.3.0-r3 GUISupport/Qt/QVTKOpenGLWindow.cxx:255:43: error: 'GL_BACK_LEFT' was not declared in this scope

  945731 - Assigned to Paul Zander
• sci-libs/cantera-3.0.1 fails to compile: InterfaceRate.cpp:395:42: error: join is not a member of fmt

  945800 - Assigned to Sergey Torokhov
• sci-libs/proj: Update to 9.5.1

  945814 - Assigned to Sci-geo Project
• sci-libs/vtk-9.3.0-r3: ‘join’ is not a member of ‘fmt’

  945942 - Assigned to Paul Zander
• sci-libs/vtk-9.3.1[cgns] fails to compile with sci-libs/hdf5[-cxx] CMake error: "missing: HDF5_INCLUDE_DIRS"

  945964 - Assigned to Paul Zander
• sci-libs/opencascade[gles2-only] build error

  946076 - Assigned to Gentoo Linux bug wranglers

Stabilization Bug Reports

• sci-libs/roc{FFT,RAND,SPARSE,Thrust,PRIM}-4.0.0-r1 please stabilize

  793914 - Assigned to Gentoo Science Related Packages
• sci-libs/parmetis-4.0.3_p20230326-r1: stablereq, then cleanup old

  908154 - Assigned to Gentoo Science Related Packages
• sci-libs/geos-3.11.2: stabilisation (was: fails to compile with gcc-13 with "error: 'uint8_t' has not been declared")

  915056 - Assigned to Sci-geo Project
• dev-cpp/eigen-3.4.0-r3 stabilisation, then cleanup old

  927892 - Assigned to Gentoo Science Related Packages
• sci-visualization/gnuplot-6.0.1-r1 stable request

  943155 - Assigned to Ulrich Müller
• sci-libs/atlas-3.11.41: stablereq

  945564 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-2.7.1-r3: stablereq

  945565 - Assigned to Gentoo Science Related Packages
• sci-libs/armadillo-12.8.2: stablereq

  945567 - Assigned to Andreas K. Hüttel

Keywording Bug Reports

• media-gfx/freecad (and dependencies): arm64 keywording

  881653 - Assigned to Paul Zander
• sci-libs/blis-1.0 arm(64) keyword request

  933473 - Assigned to
• dev-python/xarray: rekeyword

  935821 - Assigned to Python Gentoo Team
• dev-libs/openspecfun keyword request

  937226 - Assigned to Patrick Lauer
• sci-libs/libaec: Add ~ppc64 keyword

  937755 - Assigned to Gentoo Science Related Packages
• sci-libs/lrslib,sci-mathematics/polymake: re-keyword for, or give up on, x86

  942312 - Assigned to Gentoo Developers for the x86 Architecture
• sci-libs/mpfi-1.5.4_p20220401: alpha arm hppa loong mips ppc ppc64 s390 sparc keywording for texlive 2024

  945957 - Assigned to Gentoo Science Mathematics related packages