sci-libs

The sci-libs category contains various science-related libraries.


All packages

adolc Automatic differentiation system for C/C++
alglib Numerical analysis and data processing library
amd Library to order a sparse matrix prior to Cholesky factorization
armadillo Streamlined C++ linear algebra library
arpack Arnoldi package library to solve large scale eigenvalue problems
arprec Arbitrary precision float arithmetics and functions
atlas Automatically Tuned Linear Algebra Software
avogadrolibs Advanced molecule editor and visualizer 2 - libraries
beagle Open BEAGLE, a versatile EC/GA/GP framework
blas-reference Basic Linear Algebra Subprograms F77 reference implementations
bliss Compute Automorphism Groups and Canonical Labelings of Graphs
bmrblib API abstracting the BioMagResBank (BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/)
btf Algorithm for matrix permutation into block triangular form
buddy Binary Decision Diagram Package
camd Library to order a sparse matrix prior to Cholesky factorization
cbflib Library providing a simple mechanism for accessing CBF files and imgCIF files
cblas-reference C wrapper interface to the F77 reference BLAS implementation
ccfits C++ interface for cfitsio
ccolamd Constrained Column approximate minimum degree ordering algorithm
ccpn-data The Collaborative Computing Project for NMR - Data
cctbx Computational Crystallography Toolbox
cdd+ Another implementation of the double description method
cddlib C implementation of the Double Description Method of Motzkin et al
cdf Common Data Format I/O library for multi-dimensional data sets
ceres-solver Nonlinear least-squares minimizer
cfitsio C and Fortran library for manipulating FITS files
cgcode Conjugate gradient Codes for large sparse linear systems
cgnslib CFD General Notation System standard library
chemkit Library for chemistry applications
cholmod Sparse Cholesky factorization and update/downdate library
cifparse-obj Provides an object-oriented application interface to information in mmCIF format
clapack f2c'ed version of LAPACK
clashscore-db Clashscore-db for clashlist
clblas Library containing BLAS routines for OpenCL
clblast Tuned OpenCL BLAS
clipper Object-oriented libraries for crystallographic data and computation
cln Class library (C++) for numbers
cminpack C implementation of the MINPACK nonlinear optimization library
cmpfit MINPACK-1 Least Squares Fitting Library in C
coinhsl HSL mathematical software library for IPOPT
coinor-alps COIN-OR Framework for implementing parallel graph search algorithms
coinor-bcp COIN-OR Branch-Cut-Price Framework
coinor-bcps COIN-OR BiCEPS data handling library
coinor-blis COIN-OR BiCePS Linear Integer Solver
coinor-bonmin COIN-OR Basic Open-source Nonlinear Mixed INteger programming
coinor-cbc COIN-OR Branch-and-Cut Mixed Integer Programming Solver
coinor-cgl COIN-OR cutting-plane generators library
coinor-clp COIN-OR Linear Programming solver
coinor-couenne COIN-OR Convex Over and Under ENvelopes for Nonlinear Estimation
coinor-cppad COIN-OR C++ Algorithmic Differentiation
coinor-csdp COIN-OR C Library for Semi-Definite Programming
coinor-dip COIN-OR Decomposition in Integer Programming library
coinor-dylp COIN-OR using the dynamic simplex linear programming solver
coinor-flopcpp COIN-OR algebraic modeling language for linear optimization
coinor-mp COIN-OR lightweight API for COIN-OR libraries CLP, CBC, and CGL
coinor-netlib COIN-OR netlib models
coinor-os COIN-OR Optimization Services
coinor-osi COIN-OR Open Solver Interface
coinor-sample COIN-OR Sample models
coinor-smi COIN-OR Stochastic modelling interface
coinor-symphony COIN-OR solver for mixed-integer linear programs
coinor-utils COIN-OR Matrix, Vector and other utility classes
coinor-vol COIN-OR Volume algorithm linear programming solver
colamd Column approximate minimum degree ordering algorithm
colpack C++ algorithms for specialized vertex coloring problems
coot-data Data for the Crystallographic Object-Oriented Toolkit
cqrlib Utility library for quaternion arithmetic / rotation math (ANSI C implemented)
cxsparse Extended sparse matrix package
dcmtk The DICOM Toolkit
deap Novel evolutionary computation framework
djbfft Extremely fast library for floating-point convolution
dlib Numerical and networking C++ library
dmlc-core Common bricks library for building distributed machine learning.
dsdp Software for interior-point for semidefinite programming
exodusii Model developed to store and retrieve transient data for finite element analyses
fcl The Flexible Collision Library
fetk The Finite Element ToolKit - Meta package
fftw Fast C library for the Discrete Fourier Transform
Fiona OGR's neat, nimble, no-nonsense API
flann Fast approximate nearest neighbor searches in high dimensional spaces
fplll Different implementations of the floating-point LLL reduction algorithm
freesteam Open source implementation of IF97 steam tables
galib Library for genetic algorithms in C++ programs
gamer Geometry-preserving Adaptive MeshER
gaul-devel Genetic Algorithm Utility Library
gdal Translator library for raster geospatial data formats (includes OGR support)
geos Geometry engine library for Geographic Information Systems
gerris Gerris Flow Solver
getdata Reference implementation of the Dirfile, format for time-ordered binary data
gpp4 A standalone, drop-in replacement for the CCP4 library
grib_api Library for encoding and decoding WMO FM-92 GRIB messages
gsl The GNU Scientific Library
gts GNU Triangulated Surface Library
h5hut High-Performance I/O Library for Particle-based Simulations
h5part Portable High Performance Parallel Data Interface to HDF5
hdf General purpose library and format for storing scientific data
hdf5 General purpose library and file format for storing scientific data
htslib C library for high-throughput sequencing data formats
hypre Parallel matrix preconditioners library
idlcoyote GDL library from D. Fannings IDL courses
idlmarkwardt Craig Markwardt IDL procedures (MPFIT, CMSVLIB, etc)
ignition-math A small, fast, and high performance math library for robot applications
inchi A program and library for generating standard and non-standard InChI and InChIKeys
indilib INDI Astronomical Control Protocol library
io_lib General purpose trace and experiment file reading/writing interface
ipopt Interior-Point Optimizer for large-scale nonlinear optimization
ipp Intel Integrated Performance Primitive library for multimedia and data processing
itpp C++ library of mathematical, signal processing and communication
jama Java-like matrix C++ templates
jmol-acme Portions of the Acme collection required for jMol
kim-api Application Programming Interface for atomistic simulations
klu Sparse LU factorization for circuit simulation
lapack-reference Reference implementation of LAPACK
ldl Simple but educational LDL^T matrix factorization algorithm
lemon C++ template static library of common data structures and algorithms
levmar Levenberg-Marquardt nonlinear least squares C library
libaec Adaptive Entropy Coding library
libbufr ECMWF BUFR library - includes both C and Fortran example utilities
libccd Library for collision detection between two convex shapes
libccp4 The CCP4 C and F77 subroutine library
libcerf library that provides an efficient and accurate implementation of complex error functions
libcmatrix lite version of pNMRsim
libcore Robust numerical and geometric computation library
libctl Guile-based library for scientific simulations
libdap Implementation of a C++ SDK for DAP 2.0 and 3.2
libexcelformat reading, writing, and editing of XLS (BIFF8 format) files using C++
libgenome Library for sci-biology/mauve
libgeodecomp An auto-parallelizing library to speed up computer simulations
libgeotiff Library for reading TIFF files with embedded tags for geographic information
libghemical Chemical quantum mechanics and molecular mechanics
libh2o Library of routines for IF97 water & steam properties
libh2oxx C++ bindings for libh2o
libint Matrix elements (integrals) evaluation over Cartesian Gaussian functions
libmems Library for sci-biology/mauve
libmuscle Library for sci-biology/mauve
libnova Celestial Mechanics and Astronomical Calculation Library
liborigin Library for reading OriginLab OPJ project files
libpdb PDB Record I/O Libraries -- c version
libpdb++ PDB Record I/O Libraries -- c++ version
libqalculate A modern multi-purpose calculator library
libsc Support for parallel scientific applications
libsigrok basic hardware drivers for logic analyzers and input/output file format support
libsigrokdecode provide (streaming) protocol decoding functionality
libspatialindex General framework for developing spatial indices
libsvm Library for Support Vector Machines
libticables2 Library to handle different link cables for TI calculators
libticalcs2 Library for communication with TI calculators
libticonv Charset conversion library for TI calculators
libtifiles2 Library for TI calculator files
linux-gpib Kernel module and driver library for GPIB (IEEE 488.2) hardware
lis Library of Iterative Solvers for Linear Systems
lrslib Self-contained C implementation of the reverse search algorithm
magma Matrix Algebra on GPU and Multicore Architectures
mathgl Math Graphics Library
matio Library for reading and writing matlab files
mc 2D/3D AFEM code for nonlinear geometric PDE
metis A package for unstructured serial graph partitioning
minfx Numerical optimisation library
minuit A C++ physics analysis tool for function minimization
mkl Intel(R) Math Kernel Library: linear algebra, fft, math functions
mmdb The Coordinate Library, designed to assist CCP4 developers in working with coordinate files
mmtk Molecular Modeling ToolKit for Python
monomer-db Monomer library used for macromolecular structure building and refinement
mpfi Multiple precision interval arithmetic library based on MPFR
mpir Library for arbitrary precision integer arithmetic (fork of gmp)
mumps MUltifrontal Massively Parallel sparse direct matrix Solver
naga Simplified Java NIO asynchronous sockets
nanoflann C++ header-only library for Nearest Neighbor (NN) search wih KD-trees
nanoflann C++ header-only library for Nearest Neighbor (NN) search wih KD-trees
neartree Function library efficiently solving the Nearest Neighbor Problem
nemesis Enhancement to the EXODUSII finite element database model
netcdf Scientific library and interface for array oriented data access
netcdf-cxx C++ library for netCDF
netcdf-fortran Scientific library and interface for array oriented data access
nfft library for nonequispaced discrete Fourier transformations
nlopt Non-linear optimization library
o2scl Object-oriented Scientific Computing Library
oc Network Data Access Protocol client C library
octomap An Efficient Probabilistic 3D Mapping Framework Based on Octrees
ogdi Open Geographical Datastore Interface, a GIS support library
opencascade Development platform for CAD/CAE, 3D surface/solid modeling and data exchange
openfoam Open Field Operation and Manipulation - CFD Simulation Toolbox
openfoam-bin Open Field Operation and Manipulation - CFD Simulation Toolbox
openlibm High quality system independent, open source libm
orocos-bfl Bayesian Filtering Library
orocos_kdl Kinematics and Dynamics Library (KDL)
p4est Scalable Algorithms for Parallel Adaptive Mesh Refinement on Forests of Octrees
parmetis Parallel graph partitioner
parmgridgen Software for parallel (mpi) generating coarse grids
pastix Parallel solver for very large sparse linear systems
pcl 2D/3D image and point cloud processing
pgplot FORTRAN/C device-independent scientific graphic library
plotmm Plot widget for GTKmm
plplot Multi-language scientific plotting library
primegen Small, fast library to generate primes in order
profnet Neural network architecture for profacc
profphd-utils Additional utils for profphd
proj Proj.4 cartographic projection software
punc Portable Understructure for Numerical Computing
pycifrw Reading and writing CIF (Crystallographic Information Format) files
pymmlib Toolkit and library for the analysis and manipulation of macromolecular structural models
pyshp Pure Python read/write support for ESRI Shapefile format
qd Quad-double and double-double float arithmetics
qfits ESO stand-alone C library offering easy access to FITS files
qrupdate Library for updating of QR and Cholesky decompositions
rosetta-db Essential database for rosetta
rosetta-fragments Fragment library for rosetta
rtabmap Real-Time Appearance-Based Mapping (RGB-D Graph SLAM)
Rtree R-Tree spatial index for Python GIS
scalapack Subset of LAPACK routines redesigned for heterogenous (MPI) computing
scikits Common files for python scikits
scikits_image Image processing routines for SciPy
scikits_learn Python modules for machine learning and data mining
scikits_optimization Python module for numerical optimization
scikits_timeseries SciPy module for manipulating, reporting, and plotting time series
scipy Scientific algorithms library for Python
scotch Software for graph, mesh and hypergraph partitioning
shapelib Library for manipulating ESRI Shapefiles
Shapely Geometric objects, predicates, and operations
shogun Large Scale Machine Learning Toolbox
silo A mesh and field I/O library and scientific database
spooles SParse Object Oriented Linear Equations Solver
spqr Multithreaded multifrontal sparse QR factorization library
spr Statistical analysis and machine learning library
ssm A macromolecular coordinate superposition library
starparse Library for parsing NMR star files (peak-list format) and CIF files
suitesparse Meta package for a suite of sparse matrix tools
suitesparseconfig Common configurations for all packages in suitesparse
sundials Suite of nonlinear solvers
superlu Sparse LU factorization library
superlu_mt Multithreaded sparse LU factorization library
symengine Fast symbolic manipulation library, written in C++
szip Extended-Rice lossless compression algorithm implementation
ta-lib Technical Analysis Library for analyzing financial markets trends
tamu_anova ANOVA Extensions to the GNU Scientific Library
taucs C library of sparse linear solvers
tnt Template Numerical Toolkit: C++ headers for array and matrices
udunits Library for manipulating units of physical quantities
ufconfig Common configuration scripts for the SuiteSparse libraries
umfpack Unsymmetric multifrontal sparse LU factorization library
vecmath-objectclub Unofficial free implementation of Sun javax.vecmath by Kenji Hiranabe
ViSP Visual Servoing Platform: visual tracking and visual servoing library
voro++ A 3D Voronoi cell software library
votca-moo Votca Molecular orbital library
votca-tools Votca tools library
vtk The Visualization Toolkit
vtkdata Example data file for VTK
xdmf2 eXtensible Data Model and Format
xdrfile Library to read gromacs trajectory and topology files
xgks-pmel PMEL fork of XGKS, an X11-based version of the ANSI Graphical Kernel System
xkaapi Kernel for Adaptative, Asynchronous Parallel and Interactive programming
xylib Experimental x-y data reading library

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252 Packages