The sci-libs category contains various science-related libraries.

adolc | Automatic differentiation system for C/C++ |
---|---|

alglib | Numerical analysis and data processing library |

amd | Library to order a sparse matrix prior to Cholesky factorization |

armadillo | Streamlined C++ linear algebra library |

arpack | Arnoldi package library to solve large scale eigenvalue problems |

arprec | Arbitrary precision float arithmetics and functions |

atlas | Automatically Tuned Linear Algebra Software |

avogadrolibs | Advanced molecule editor and visualizer 2 - libraries |

beagle | Open BEAGLE, a versatile EC/GA/GP framework |

blas-reference | Basic Linear Algebra Subprograms F77 reference implementations |

bliss | Compute Automorphism Groups and Canonical Labelings of Graphs |

bmrblib | API abstracting the BioMagResBank (BMRB) NMR-STAR format |

btf | Algorithm for matrix permutation into block triangular form |

buddy | Binary Decision Diagram Package |

camd | Library to order a sparse matrix prior to Cholesky factorization |

cbflib | Library providing a simple mechanism for accessing CBF files and imgCIF files |

cblas-reference | C wrapper interface to the F77 reference BLAS implementation |

ccfits | C++ interface for cfitsio |

ccolamd | Constrained Column approximate minimum degree ordering algorithm |

ccpn-data | The Collaborative Computing Project for NMR - Data |

cctbx | Computational Crystallography Toolbox |

cdd+ | Another implementation of the double description method |

cddlib | C implementation of the Double Description Method of Motzkin et al |

cdf | Common Data Format I/O library for multi-dimensional data sets |

ceres-solver | Nonlinear least-squares minimizer |

cfitsio | C and Fortran library for manipulating FITS files |

cgcode | Conjugate gradient Codes for large sparse linear systems |

cgnslib | CFD General Notation System standard library |

chemkit | Library for chemistry applications |

cholmod | Sparse Cholesky factorization and update/downdate library |

cifparse-obj | Provides an object-oriented application interface to information in mmCIF format |

clapack | f2c'ed version of LAPACK |

clashscore-db | Clashscore-db for clashlist |

clblas | Library containing BLAS routines for OpenCL |

clblast | Tuned OpenCL BLAS |

clipper | Object-oriented libraries for crystallographic data and computation |

cln | Class library (C++) for numbers |

cminpack | C implementation of the MINPACK nonlinear optimization library |

cmpfit | MINPACK-1 Least Squares Fitting Library in C |

coinhsl | HSL mathematical software library for IPOPT |

coinor-alps | COIN-OR Framework for implementing parallel graph search algorithms |

coinor-bcp | COIN-OR Branch-Cut-Price Framework |

coinor-bcps | COIN-OR BiCEPS data handling library |

coinor-blis | COIN-OR BiCePS Linear Integer Solver |

coinor-bonmin | COIN-OR Basic Open-source Nonlinear Mixed INteger programming |

coinor-cbc | COIN-OR Branch-and-Cut Mixed Integer Programming Solver |

coinor-cgl | COIN-OR cutting-plane generators library |

coinor-clp | COIN-OR Linear Programming solver |

coinor-couenne | COIN-OR Convex Over and Under ENvelopes for Nonlinear Estimation |

coinor-cppad | COIN-OR C++ Algorithmic Differentiation |

coinor-csdp | COIN-OR C Library for Semi-Definite Programming |

coinor-dip | COIN-OR Decomposition in Integer Programming library |

coinor-dylp | COIN-OR using the dynamic simplex linear programming solver |

coinor-flopcpp | COIN-OR algebraic modeling language for linear optimization |

coinor-mp | COIN-OR lightweight API for COIN-OR libraries CLP, CBC, and CGL |

coinor-netlib | COIN-OR netlib models |

coinor-os | COIN-OR Optimization Services |

coinor-osi | COIN-OR Open Solver Interface |

coinor-sample | COIN-OR Sample models |

coinor-smi | COIN-OR Stochastic modelling interface |

coinor-symphony | COIN-OR solver for mixed-integer linear programs |

coinor-utils | COIN-OR Matrix, Vector and other utility classes |

coinor-vol | COIN-OR Volume algorithm linear programming solver |

colamd | Column approximate minimum degree ordering algorithm |

colpack | C++ algorithms for specialized vertex coloring problems |

coot-data | Data for the Crystallographic Object-Oriented Toolkit |

cqrlib | Utility library for quaternion arithmetic / rotation math (ANSI C implemented) |

cxsparse | Extended sparse matrix package |

dcmtk | The DICOM Toolkit |

deap | Novel evolutionary computation framework |

djbfft | Extremely fast library for floating-point convolution |

dlib | Numerical and networking C++ library |

dmlc-core | Common bricks library for building distributed machine learning. |

dsdp | Software for interior-point for semidefinite programming |

exodusii | Model developed to store and retrieve transient data for finite element analyses |

fcl | The Flexible Collision Library |

fetk | The Finite Element ToolKit - Meta package |

fftw | Fast C library for the Discrete Fourier Transform |

Fiona | OGR's neat, nimble, no-nonsense API |

flann | Fast approximate nearest neighbor searches in high dimensional spaces |

fplll | Different implementations of the floating-point LLL reduction algorithm |

freesteam | Open source implementation of IF97 steam tables |

galib | Library for genetic algorithms in C++ programs |

gamer | Geometry-preserving Adaptive MeshER |

gaul-devel | Genetic Algorithm Utility Library |

gdal | Translator library for raster geospatial data formats (includes OGR support) |

geos | Geometry engine library for Geographic Information Systems |

gerris | Gerris Flow Solver |

getdata | Reference implementation of the Dirfile, format for time-ordered binary data |

gpp4 | A standalone, drop-in replacement for the CCP4 library |

grib_api | Library for encoding and decoding WMO FM-92 GRIB messages |

gsl | The GNU Scientific Library |

gts | GNU Triangulated Surface Library |

h5hut | High-Performance I/O Library for Particle-based Simulations |

h5part | Portable High Performance Parallel Data Interface to HDF5 |

hdf | General purpose library and format for storing scientific data |

hdf5 | General purpose library and file format for storing scientific data |

htslib | C library for high-throughput sequencing data formats |

hypre | Parallel matrix preconditioners library |

idlcoyote | GDL library from D. Fannings IDL courses |

idlmarkwardt | Craig Markwardt IDL procedures (MPFIT, CMSVLIB, etc) |

ignition-math | A small, fast, and high performance math library for robot applications |

inchi | Program and library for generating standard and non-standard InChI and InChIKeys |

indilib | INDI Astronomical Control Protocol library |

io_lib | General purpose trace and experiment file reading/writing interface |

ipopt | Interior-Point Optimizer for large-scale nonlinear optimization |

itpp | C++ library of mathematical, signal processing and communication |

jama | Java-like matrix C++ templates |

jmol-acme | Portions of the Acme collection required for jMol |

kim-api | Application Programming Interface for atomistic simulations |

klu | Sparse LU factorization for circuit simulation |

lapack-reference | Reference implementation of LAPACK |

ldl | Simple but educational LDL^T matrix factorization algorithm |

lemon | C++ template static library of common data structures and algorithms |

levmar | Levenberg-Marquardt nonlinear least squares C library |

libaec | Adaptive Entropy Coding library |

libbufr | ECMWF BUFR library - includes both C and Fortran example utilities |

libccd | Library for collision detection between two convex shapes |

libccp4 | The CCP4 C and F77 subroutine library |

libcerf | Efficient and accurate implementation of complex error functions |

libcmatrix | lite version of pNMRsim |

libcore | Robust numerical and geometric computation library |

libctl | Guile-based library for scientific simulations |

libdap | Implementation of a C++ SDK for DAP 2.0 and 3.2 |

libexcelformat | reading, writing, and editing of XLS (BIFF8 format) files using C++ |

libgenome | Library for sci-biology/mauve |

libgeodecomp | An auto-parallelizing library to speed up computer simulations |

libgeotiff | Library for reading TIFF files with embedded tags for geographic information |

libghemical | Chemical quantum mechanics and molecular mechanics |

libh2o | Library of routines for IF97 water & steam properties |

libh2oxx | C++ bindings for libh2o |

libint | Matrix elements (integrals) evaluation over Cartesian Gaussian functions |

libmems | Library for sci-biology/mauve |

libmuscle | Library for sci-biology/mauve |

libnova | Celestial Mechanics and Astronomical Calculation Library |

liborigin | Library for reading OriginLab OPJ project files |

libpdb | PDB Record I/O Libraries -- c version |

libpdb++ | PDB Record I/O Libraries -- c++ version |

libqalculate | A modern multi-purpose calculator library |

libsc | Support for parallel scientific applications |

libsigrok | basic hardware drivers for logic analyzers and input/output file format support |

libsigrokdecode | provide (streaming) protocol decoding functionality |

libspatialindex | General framework for developing spatial indices |

libsvm | Library for Support Vector Machines |

libticables2 | Library to handle different link cables for TI calculators |

libticalcs2 | Library for communication with TI calculators |

libticonv | Charset conversion library for TI calculators |

libtifiles2 | Library for TI calculator files |

linux-gpib | Kernel module and driver library for GPIB (IEEE 488.2) hardware |

lis | Library of Iterative Solvers for Linear Systems |

lmfit | library for Levenberg-Marquardt least-squares minimization and curve fitting |

lrslib | Self-contained C implementation of the reverse search algorithm |

magma | Matrix Algebra on GPU and Multicore Architectures |

mathgl | Math Graphics Library |

matio | Library for reading and writing matlab files |

mc | 2D/3D AFEM code for nonlinear geometric PDE |

metis | A package for unstructured serial graph partitioning |

minfx | Numerical optimisation library |

minuit | A C++ physics analysis tool for function minimization |

mkl | Intel(R) Math Kernel Library: linear algebra, fft, math functions |

mmdb | The Coordinate Library for working with CCP4 coordinate files |

mmtk | Molecular Modeling ToolKit for Python |

monomer-db | Monomer library used for macromolecular structure building and refinement |

mpfi | Multiple precision interval arithmetic library based on MPFR |

mpir | Library for arbitrary precision integer arithmetic (fork of gmp) |

mumps | MUltifrontal Massively Parallel sparse direct matrix Solver |

naga | Simplified Java NIO asynchronous sockets |

nanoflann | C++ header-only library for Nearest Neighbor (NN) search wih KD-trees |

neartree | Function library efficiently solving the Nearest Neighbor Problem |

nemesis | Enhancement to the EXODUSII finite element database model |

netcdf | Scientific library and interface for array oriented data access |

netcdf-cxx | C++ library for netCDF |

netcdf-fortran | Scientific library and interface for array oriented data access |

nfft | library for nonequispaced discrete Fourier transformations |

nlopt | Non-linear optimization library |

o2scl | Object-oriented Scientific Computing Library |

oc | Network Data Access Protocol client C library |

octomap | An Efficient Probabilistic 3D Mapping Framework Based on Octrees |

ogdi | Open Geographical Datastore Interface, a GIS support library |

opencascade | Development platform for CAD/CAE, 3D surface/solid modeling and data exchange |

openfoam | Open Field Operation and Manipulation - CFD Simulation Toolbox |

openfoam-bin | Open Field Operation and Manipulation - CFD Simulation Toolbox |

openlibm | High quality system independent, open source libm |

orocos-bfl | Bayesian Filtering Library |

orocos_kdl | Kinematics and Dynamics Library (KDL) |

p4est | Scalable Algorithms for Parallel Adaptive Mesh Refinement on Forests of Octrees |

parmetis | Parallel graph partitioner |

parmgridgen | Software for parallel (mpi) generating coarse grids |

pastix | Parallel solver for very large sparse linear systems |

pcl | 2D/3D image and point cloud processing |

pgplot | FORTRAN/C device-independent scientific graphic library |

plotmm | Plot widget for GTKmm |

plplot | Multi-language scientific plotting library |

primegen | Small, fast library to generate primes in order |

profnet | Neural network architecture for profacc |

profphd-utils | Additional utils for profphd |

proj | Proj.4 cartographic projection software |

punc | Portable Understructure for Numerical Computing |

pycifrw | Reading and writing CIF (Crystallographic Information Format) files |

pymmlib | Toolkit and library for the analysis and manipulation of macromolecular models |

pyshp | Pure Python read/write support for ESRI Shapefile format |

qd | Quad-double and double-double float arithmetics |

qfits | ESO stand-alone C library offering easy access to FITS files |

qrupdate | Library for updating of QR and Cholesky decompositions |

rosetta-db | Essential database for rosetta |

rosetta-fragments | Fragment library for rosetta |

rtabmap | Real-Time Appearance-Based Mapping (RGB-D Graph SLAM) |

Rtree | R-Tree spatial index for Python GIS |

scalapack | Subset of LAPACK routines redesigned for heterogenous (MPI) computing |

scikits | Common files for python scikits |

scikits_image | Image processing routines for SciPy |

scikits_learn | Python modules for machine learning and data mining |

scikits_optimization | Python module for numerical optimization |

scikits_timeseries | SciPy module for manipulating, reporting, and plotting time series |

scipy | Scientific algorithms library for Python |

scotch | Software for graph, mesh and hypergraph partitioning |

shapelib | Library for manipulating ESRI Shapefiles |

Shapely | Geometric objects, predicates, and operations |

shogun | Large Scale Machine Learning Toolbox |

silo | A mesh and field I/O library and scientific database |

spooles | SParse Object Oriented Linear Equations Solver |

spqr | Multithreaded multifrontal sparse QR factorization library |

spr | Statistical analysis and machine learning library |

ssm | A macromolecular coordinate superposition library |

starparse | Library for parsing NMR star files (peak-list format) and CIF files |

suitesparse | Meta package for a suite of sparse matrix tools |

suitesparseconfig | Common configurations for all packages in suitesparse |

sundials | Suite of nonlinear solvers |

superlu | Sparse LU factorization library |

superlu_mt | Multithreaded sparse LU factorization library |

symengine | Fast symbolic manipulation library, written in C++ |

szip | Extended-Rice lossless compression algorithm implementation |

ta-lib | Technical Analysis Library for analyzing financial markets trends |

tamu_anova | ANOVA Extensions to the GNU Scientific Library |

taucs | C library of sparse linear solvers |

tensorflow | Computation framework using data flow graphs for scalable machine learning |

tnt | Template Numerical Toolkit: C++ headers for array and matrices |

udunits | Library for manipulating units of physical quantities |

ufconfig | Common configuration scripts for the SuiteSparse libraries |

umfpack | Unsymmetric multifrontal sparse LU factorization library |

vecmath-objectclub | Unofficial free implementation of Sun javax.vecmath by Kenji Hiranabe |

ViSP | Visual Servoing Platform: visual tracking and visual servoing library |

voro++ | A 3D Voronoi cell software library |

votca-moo | Votca Molecular orbital library |

votca-tools | Votca tools library |

vtk | The Visualization Toolkit |

vtkdata | Example data file for VTK |

xdmf2 | eXtensible Data Model and Format |

xdrfile | Library to read gromacs trajectory and topology files |

xgks-pmel | PMEL fork of XGKS, an X11-based version of the ANSI Graphical Kernel System |

xkaapi | Kernel for Adaptative, Asynchronous Parallel and Interactive programming |

xylib | Experimental x-y data reading library |

252 Packages