The sci-libs category contains various science-related libraries.
| adolc | Automatic differentiation system for C/C++ |
|---|---|
| alglib | Numerical analysis and data processing library |
| amd | Library to order a sparse matrix prior to Cholesky factorization |
| armadillo | Streamlined C++ linear algebra library |
| arpack | Arnoldi package library to solve large scale eigenvalue problems |
| arprec | Arbitrary precision float arithmetics and functions |
| atlas | Automatically Tuned Linear Algebra Software |
| avogadrolibs | Advanced molecule editor and visualizer 2 - libraries |
| beagle | Open BEAGLE, a versatile EC/GA/GP framework |
| blas-reference | Basic Linear Algebra Subprograms F77 reference implementations |
| bliss | Compute Automorphism Groups and Canonical Labelings of Graphs |
| bmrblib | API abstracting the BioMagResBank (BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/) |
| btf | Algorithm for matrix permutation into block triangular form |
| buddy | Binary Decision Diagram Package |
| camd | Library to order a sparse matrix prior to Cholesky factorization |
| cbflib | Library providing a simple mechanism for accessing CBF files and imgCIF files |
| cblas-reference | C wrapper interface to the F77 reference BLAS implementation |
| ccfits | C++ interface for cfitsio |
| ccolamd | Constrained Column approximate minimum degree ordering algorithm |
| ccpn-data | The Collaborative Computing Project for NMR - Data |
| cctbx | Computational Crystallography Toolbox |
| cdd+ | Another implementation of the double description method |
| cddlib | C implementation of the Double Description Method of Motzkin et al |
| cdf | Common Data Format I/O library for multi-dimensional data sets |
| ceres-solver | Nonlinear least-squares minimizer |
| cfitsio | C and Fortran library for manipulating FITS files |
| cgcode | Conjugate gradient Codes for large sparse linear systems |
| cgnslib | CFD General Notation System standard library |
| chemkit | Library for chemistry applications |
| cholmod | Sparse Cholesky factorization and update/downdate library |
| cifparse-obj | Provides an object-oriented application interface to information in mmCIF format |
| clapack | f2c'ed version of LAPACK |
| clashscore-db | Clashscore-db for clashlist |
| clblas | Library containing BLAS routines for OpenCL |
| clblast | Tuned OpenCL BLAS |
| clipper | Object-oriented libraries for crystallographic data and computation |
| cln | Class library (C++) for numbers |
| cminpack | C implementation of the MINPACK nonlinear optimization library |
| cmpfit | MINPACK-1 Least Squares Fitting Library in C |
| coinhsl | HSL mathematical software library for IPOPT |
| coinor-alps | COIN-OR Framework for implementing parallel graph search algorithms |
| coinor-bcp | COIN-OR Branch-Cut-Price Framework |
| coinor-bcps | COIN-OR BiCEPS data handling library |
| coinor-blis | COIN-OR BiCePS Linear Integer Solver |
| coinor-bonmin | COIN-OR Basic Open-source Nonlinear Mixed INteger programming |
| coinor-cbc | COIN-OR Branch-and-Cut Mixed Integer Programming Solver |
| coinor-cgl | COIN-OR cutting-plane generators library |
| coinor-clp | COIN-OR Linear Programming solver |
| coinor-couenne | COIN-OR Convex Over and Under ENvelopes for Nonlinear Estimation |
| coinor-cppad | COIN-OR C++ Algorithmic Differentiation |
| coinor-csdp | COIN-OR C Library for Semi-Definite Programming |
| coinor-dip | COIN-OR Decomposition in Integer Programming library |
| coinor-dylp | COIN-OR using the dynamic simplex linear programming solver |
| coinor-flopcpp | COIN-OR algebraic modeling language for linear optimization |
| coinor-mp | COIN-OR lightweight API for COIN-OR libraries CLP, CBC, and CGL |
| coinor-netlib | COIN-OR netlib models |
| coinor-os | COIN-OR Optimization Services |
| coinor-osi | COIN-OR Open Solver Interface |
| coinor-sample | COIN-OR Sample models |
| coinor-smi | COIN-OR Stochastic modelling interface |
| coinor-symphony | COIN-OR solver for mixed-integer linear programs |
| coinor-utils | COIN-OR Matrix, Vector and other utility classes |
| coinor-vol | COIN-OR Volume algorithm linear programming solver |
| colamd | Column approximate minimum degree ordering algorithm |
| colpack | C++ algorithms for specialized vertex coloring problems |
| coot-data | Data for the Crystallographic Object-Oriented Toolkit |
| cqrlib | Utility library for quaternion arithmetic / rotation math (ANSI C implemented) |
| cxsparse | Extended sparse matrix package |
| dcmtk | The DICOM Toolkit |
| deap | Novel evolutionary computation framework |
| djbfft | Extremely fast library for floating-point convolution |
| dlib | Numerical and networking C++ library |
| dmlc-core | Common bricks library for building distributed machine learning. |
| dsdp | Software for interior-point for semidefinite programming |
| exodusii | Model developed to store and retrieve transient data for finite element analyses |
| fcl | The Flexible Collision Library |
| fetk | The Finite Element ToolKit - Meta package |
| fftw | Fast C library for the Discrete Fourier Transform |
| Fiona | OGR's neat, nimble, no-nonsense API |
| flann | Fast approximate nearest neighbor searches in high dimensional spaces |
| fplll | Different implementations of the floating-point LLL reduction algorithm |
| freesteam | Open source implementation of IF97 steam tables |
| galib | Library for genetic algorithms in C++ programs |
| gamer | Geometry-preserving Adaptive MeshER |
| gaul-devel | Genetic Algorithm Utility Library |
| gdal | Translator library for raster geospatial data formats (includes OGR support) |
| geos | Geometry engine library for Geographic Information Systems |
| gerris | Gerris Flow Solver |
| getdata | Reference implementation of the Dirfile, format for time-ordered binary data |
| gpp4 | A standalone, drop-in replacement for the CCP4 library |
| grib_api | Library for encoding and decoding WMO FM-92 GRIB messages |
| gsl | The GNU Scientific Library |
| gts | GNU Triangulated Surface Library |
| h5hut | High-Performance I/O Library for Particle-based Simulations |
| h5part | Portable High Performance Parallel Data Interface to HDF5 |
| hdf | General purpose library and format for storing scientific data |
| hdf5 | General purpose library and file format for storing scientific data |
| htslib | C library for high-throughput sequencing data formats |
| hypre | Parallel matrix preconditioners library |
| idlcoyote | GDL library from D. Fannings IDL courses |
| idlmarkwardt | Craig Markwardt IDL procedures (MPFIT, CMSVLIB, etc) |
| ignition-math | A small, fast, and high performance math library for robot applications |
| inchi | A program and library for generating standard and non-standard InChI and InChIKeys |
| indilib | INDI Astronomical Control Protocol library |
| io_lib | General purpose trace and experiment file reading/writing interface |
| ipopt | Interior-Point Optimizer for large-scale nonlinear optimization |
| ipp | Intel Integrated Performance Primitive library for multimedia and data processing |
| itpp | C++ library of mathematical, signal processing and communication |
| jama | Java-like matrix C++ templates |
| jmol-acme | Portions of the Acme collection required for jMol |
| kim-api | Application Programming Interface for atomistic simulations |
| klu | Sparse LU factorization for circuit simulation |
| lapack-reference | Reference implementation of LAPACK |
| ldl | Simple but educational LDL^T matrix factorization algorithm |
| lemon | C++ template static library of common data structures and algorithms |
| levmar | Levenberg-Marquardt nonlinear least squares C library |
| libaec | Adaptive Entropy Coding library |
| libbufr | ECMWF BUFR library - includes both C and Fortran example utilities |
| libccd | Library for collision detection between two convex shapes |
| libccp4 | The CCP4 C and F77 subroutine library |
| libcerf | library that provides an efficient and accurate implementation of complex error functions |
| libcmatrix | lite version of pNMRsim |
| libcore | Robust numerical and geometric computation library |
| libctl | Guile-based library for scientific simulations |
| libdap | Implementation of a C++ SDK for DAP 2.0 and 3.2 |
| libexcelformat | reading, writing, and editing of XLS (BIFF8 format) files using C++ |
| libgenome | Library for sci-biology/mauve |
| libgeodecomp | An auto-parallelizing library to speed up computer simulations |
| libgeotiff | Library for reading TIFF files with embedded tags for geographic information |
| libghemical | Chemical quantum mechanics and molecular mechanics |
| libh2o | Library of routines for IF97 water & steam properties |
| libh2oxx | C++ bindings for libh2o |
| libint | Matrix elements (integrals) evaluation over Cartesian Gaussian functions |
| libmems | Library for sci-biology/mauve |
| libmuscle | Library for sci-biology/mauve |
| libnova | Celestial Mechanics and Astronomical Calculation Library |
| liborigin | Library for reading OriginLab OPJ project files |
| libpdb | PDB Record I/O Libraries -- c version |
| libpdb++ | PDB Record I/O Libraries -- c++ version |
| libqalculate | A modern multi-purpose calculator library |
| libsc | Support for parallel scientific applications |
| libsigrok | basic hardware drivers for logic analyzers and input/output file format support |
| libsigrokdecode | provide (streaming) protocol decoding functionality |
| libspatialindex | General framework for developing spatial indices |
| libsvm | Library for Support Vector Machines |
| libticables2 | Library to handle different link cables for TI calculators |
| libticalcs2 | Library for communication with TI calculators |
| libticonv | Charset conversion library for TI calculators |
| libtifiles2 | Library for TI calculator files |
| linux-gpib | Kernel module and driver library for GPIB (IEEE 488.2) hardware |
| lis | Library of Iterative Solvers for Linear Systems |
| lrslib | Self-contained C implementation of the reverse search algorithm |
| magma | Matrix Algebra on GPU and Multicore Architectures |
| mathgl | Math Graphics Library |
| matio | Library for reading and writing matlab files |
| mc | 2D/3D AFEM code for nonlinear geometric PDE |
| metis | A package for unstructured serial graph partitioning |
| minfx | Numerical optimisation library |
| minuit | A C++ physics analysis tool for function minimization |
| mkl | Intel(R) Math Kernel Library: linear algebra, fft, math functions |
| mmdb | The Coordinate Library, designed to assist CCP4 developers in working with coordinate files |
| mmtk | Molecular Modeling ToolKit for Python |
| monomer-db | Monomer library used for macromolecular structure building and refinement |
| mpfi | Multiple precision interval arithmetic library based on MPFR |
| mpir | Library for arbitrary precision integer arithmetic (fork of gmp) |
| mumps | MUltifrontal Massively Parallel sparse direct matrix Solver |
| naga | Simplified Java NIO asynchronous sockets |
| nanoflann | C++ header-only library for Nearest Neighbor (NN) search wih KD-trees |
| nanoflann | C++ header-only library for Nearest Neighbor (NN) search wih KD-trees |
| neartree | Function library efficiently solving the Nearest Neighbor Problem |
| nemesis | Enhancement to the EXODUSII finite element database model |
| netcdf | Scientific library and interface for array oriented data access |
| netcdf-cxx | C++ library for netCDF |
| netcdf-fortran | Scientific library and interface for array oriented data access |
| nfft | library for nonequispaced discrete Fourier transformations |
| nlopt | Non-linear optimization library |
| o2scl | Object-oriented Scientific Computing Library |
| oc | Network Data Access Protocol client C library |
| octomap | An Efficient Probabilistic 3D Mapping Framework Based on Octrees |
| ogdi | Open Geographical Datastore Interface, a GIS support library |
| opencascade | Development platform for CAD/CAE, 3D surface/solid modeling and data exchange |
| openfoam | Open Field Operation and Manipulation - CFD Simulation Toolbox |
| openfoam-bin | Open Field Operation and Manipulation - CFD Simulation Toolbox |
| openlibm | High quality system independent, open source libm |
| orocos-bfl | Bayesian Filtering Library |
| orocos_kdl | Kinematics and Dynamics Library (KDL) |
| p4est | Scalable Algorithms for Parallel Adaptive Mesh Refinement on Forests of Octrees |
| parmetis | Parallel graph partitioner |
| parmgridgen | Software for parallel (mpi) generating coarse grids |
| pastix | Parallel solver for very large sparse linear systems |
| pcl | 2D/3D image and point cloud processing |
| pgplot | FORTRAN/C device-independent scientific graphic library |
| plotmm | Plot widget for GTKmm |
| plplot | Multi-language scientific plotting library |
| primegen | Small, fast library to generate primes in order |
| profnet | Neural network architecture for profacc |
| profphd-utils | Additional utils for profphd |
| proj | Proj.4 cartographic projection software |
| punc | Portable Understructure for Numerical Computing |
| pycifrw | Reading and writing CIF (Crystallographic Information Format) files |
| pymmlib | Toolkit and library for the analysis and manipulation of macromolecular structural models |
| pyshp | Pure Python read/write support for ESRI Shapefile format |
| qd | Quad-double and double-double float arithmetics |
| qfits | ESO stand-alone C library offering easy access to FITS files |
| qrupdate | Library for updating of QR and Cholesky decompositions |
| rosetta-db | Essential database for rosetta |
| rosetta-fragments | Fragment library for rosetta |
| rtabmap | Real-Time Appearance-Based Mapping (RGB-D Graph SLAM) |
| Rtree | R-Tree spatial index for Python GIS |
| scalapack | Subset of LAPACK routines redesigned for heterogenous (MPI) computing |
| scikits | Common files for python scikits |
| scikits_image | Image processing routines for SciPy |
| scikits_learn | Python modules for machine learning and data mining |
| scikits_optimization | Python module for numerical optimization |
| scikits_timeseries | SciPy module for manipulating, reporting, and plotting time series |
| scipy | Scientific algorithms library for Python |
| scotch | Software for graph, mesh and hypergraph partitioning |
| shapelib | Library for manipulating ESRI Shapefiles |
| Shapely | Geometric objects, predicates, and operations |
| shogun | Large Scale Machine Learning Toolbox |
| silo | A mesh and field I/O library and scientific database |
| spooles | SParse Object Oriented Linear Equations Solver |
| spqr | Multithreaded multifrontal sparse QR factorization library |
| spr | Statistical analysis and machine learning library |
| ssm | A macromolecular coordinate superposition library |
| starparse | Library for parsing NMR star files (peak-list format) and CIF files |
| suitesparse | Meta package for a suite of sparse matrix tools |
| suitesparseconfig | Common configurations for all packages in suitesparse |
| sundials | Suite of nonlinear solvers |
| superlu | Sparse LU factorization library |
| superlu_mt | Multithreaded sparse LU factorization library |
| symengine | Fast symbolic manipulation library, written in C++ |
| szip | Extended-Rice lossless compression algorithm implementation |
| ta-lib | Technical Analysis Library for analyzing financial markets trends |
| tamu_anova | ANOVA Extensions to the GNU Scientific Library |
| taucs | C library of sparse linear solvers |
| tnt | Template Numerical Toolkit: C++ headers for array and matrices |
| udunits | Library for manipulating units of physical quantities |
| ufconfig | Common configuration scripts for the SuiteSparse libraries |
| umfpack | Unsymmetric multifrontal sparse LU factorization library |
| vecmath-objectclub | Unofficial free implementation of Sun javax.vecmath by Kenji Hiranabe |
| ViSP | Visual Servoing Platform: visual tracking and visual servoing library |
| voro++ | A 3D Voronoi cell software library |
| votca-moo | Votca Molecular orbital library |
| votca-tools | Votca tools library |
| vtk | The Visualization Toolkit |
| vtkdata | Example data file for VTK |
| xdmf2 | eXtensible Data Model and Format |
| xdrfile | Library to read gromacs trajectory and topology files |
| xgks-pmel | PMEL fork of XGKS, an X11-based version of the ANSI Graphical Kernel System |
| xkaapi | Kernel for Adaptative, Asynchronous Parallel and Interactive programming |
| xylib | Experimental x-y data reading library |