Gentoo Project

Science Project

Bug Reports

• dev-python/matplotlib: bundles x11-libs/agg

  456766 - Assigned to Gentoo Science Related Packages
• dev-python/numpy fails to detect ATLAS

  469116 - Assigned to Gentoo Science Related Packages
• dev-python/pycuda: uses RESTRICT=userpriv

  516572 - Assigned to Gentoo Science Related Packages
• sci-libs/adolc-2.5.2 : /.../ampisupport.cpp:53:56: error: ‘ADTOOL_AMPI_push_CallCodeReserve’ was not declared in this scope

  586746 - Assigned to Gentoo Science Related Packages
• sci-libs/libsvm-3.17-r3: add octave support

  591354 - Assigned to Gentoo Science Related Packages
• sci-libs/arpack-3.1.3-r1 - configure: error: Cannot find LAPACK libraries

  596920 - Assigned to Gentoo Science Related Packages
• sci-visualization/gwyddion - several automagic dependencies

  598682 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.7.1 : /sbin/ldconfig: File /usr/lib64/libthreads-fibers.so is empty, not checked.

  616616 - Assigned to Nicolas Bock
• sci-libs/pastix-5.2.3 fails tests - cp: cannot create regular file '/usr/bin/pastix-conf': Permission denied

  619316 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.7.1 : /.../ld: cannot find -lmoduleEveryLB

  624346 - Assigned to Nicolas Bock
• sci-libs/pgplot-5.2.2-r6 will not build with USE static-libs: recompile with -fPIC

  625776 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.7.1 : libthreads-fibers.c:1106:21: fatal error: windows.h: No such file or directory

  626986 - Assigned to Nicolas Bock
• sys-cluster/charm-6.7.1 : Fatal Error by charmc in directory /var/tmp/portage/sys-cluster/charm-6.7.1/work/charm-6.7.1/tests/charm++/load_balancing/lb_test

  631266 - Assigned to Nicolas Bock
• app-text/jabref-bin-4.0 fails to find java VM

  635962 - Assigned to Nicolas Bock
• app-text/jabref-bin-4.0 and 4.1 is in pre alpha state

  636036 - Assigned to Nicolas Bock
• sci-libs/coinor-cbc-2.8.9 : ./.../libCbcSolver.so: undefined reference to virtual thunk to OsiClpSolverInterface::getColName[abi:cxx11](int, unsigned int) const

  638240 - Assigned to Gentoo Science Related Packages
• sci-libs/arpack-3.5.0 : configure: error: cannot find BLAS libraries

  638384 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas - *** No rule to make target 'liblapack.a', needed by 'libclapack.a'. Stop

  648386 - Assigned to Gentoo Science Related Packages
• sci-libs/xdmf2-1.0_p141226-r2 with sys-cluster/mpich-3.2-r2 - Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") -- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS)

  649426 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm Please set VARTEXFONTS=${T}/fonts to prevent sandbox violations

  652036 - Assigned to Nicolas Bock
• sci-libs/xdmf2-1.0_p141226-r4: compile failure: libXdmfCore.so: undefined reference to H5...

  657964 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.11.39 - ACCESS DENIED cannot create directory ‘/etc/env.d/alternatives/cblas’: Permission denied

  658026 - Assigned to Gentoo Science Related Packages
• sci-libs/udunits-2.2.20 : * Currently no working fortran compiler is available (see /var/tmp/portage/sci-libs/udunits-2.2.20/temp/_fortran_compile_test.log for information)

  662538 - Assigned to Gentoo Science Related Packages
• sci-calculators/tiemu-3.03-r1 : /.../stdlib.h:588:24: error: macro abort passed 1 arguments, but takes just 0

  664698 - Assigned to Gentoo Science Related Packages
• net-libs/zmqpp-4.2.0 : /.../proxy.cpp:14:3: error: zmq_proxy was not declared in this scope

  667060 - Assigned to Gentoo Science Related Packages
• sci-mathematics/minisat-2.2.0-r4 is not honoring rules in template.mk to exclude Main.o* when creating libminisat.a

  667976 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-1.15.4 USE=mkl - fails at either build time or run time for multiple undisclosed reasons

  672464 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.6.1-r1: test failures (t_dap3a, test_cvt3, test_vara, tst_ncdap3.sh)

  673200 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-1.16 : uninstalling, orphaned links are left behind, causing breakage

  677044 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5 USE="fortran mpi" - FATAL ERROR: Cannot read module file 'mpi.mod' opened at (1), because it was created by a different version of GNU Fortran

  682794 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-2.5: test failure: test multifit_nlinear fails

  687342 - Assigned to Gentoo Science Related Packages
• sci-libs/umfpack-5.6.2 - configure: error: Cannot find blas libraries

  688792 - Assigned to Gentoo Science Related Packages
• app-eselect/eselect-cblas: removal (was: please bump to a newer EAPI)

  697390 - Assigned to Gentoo Science Related Packages
• sci-mathematics/minisat-2.2.0-r4: error: friend declaration of 'Minisat::Lit mkLit(Minisat::Var, bool)' specifies default arguments and isn't a definition

  698566 - Assigned to Gentoo Science Related Packages
• dev-libs/libtecla-1.6.3 : x86_64-pc-linux-gnu-ld: error: cannot find -lc

  700788 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm: missing python_check_deps()

  708592 - Assigned to Nicolas Bock
• sci-libs/parmetis-4.0.3_p20230326-r1 - QA Notice: The following files contain insecure RUNPATHs: .../usr/lib64/libparmetis.so

  709598 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3 : ebuild uses colon (:) as a sed delimiter

  711156 - Assigned to Gentoo Science Related Packages
• sci-libs/cholmod-3.0.13 : configure: error: Could not find ccolamd library

  711540 - Assigned to Gentoo Science Related Packages
• sci-libs/clblast-0.10.0: CMake Error at /.../FindPackageHandleStandardArgs.cmake:146: Could NOT find OpenCL (missing: OPENCL_LIBRARIES)

  711990 - Assigned to Gentoo Science Related Packages
• dev-cpp/kokkos-3.7.1 : /.../Kokkos_Stacktrace.cpp: fatal error: execinfo.h: No such file or directory

  712748 - Assigned to Gentoo musl team
• dev-libs/libf2c-20130927-r1 : uninit.c: fatal error: fpu_control.h: No such file or directory

  714642 - Assigned to Gentoo musl team
• sci-libs/sundials-6.2.0 fails tests on x86

  715556 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.13-r1 : local_nc.h: fatal error: rpc/types.h: No such file or directory

  715632 - Assigned to Gentoo musl team
• sci-libs/coinor-alps-1.5.7 : AlpsSubTree.cpp: error: variable AlpsSubTree::exploreUnitWork(bool, int, double, AlpsExitStatus&, int

  715916 - Assigned to Gentoo musl team
• sci-visualization/xd3d-8.3.1-r1 : * configure failed.

  716114 - Assigned to Gentoo musl team
• sci-libs/ogdi-4.1.0-r1 installs shared libraries that lack a SONAME

  717178 - Assigned to Gentoo Science Related Packages
• dev-python/matplotlib GUI front end USE flag required

  720196 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.12.12 cannot had hsl use flag

  720998 - Assigned to Gentoo Science Related Packages
• sci-libs/ogdi fails tests

  721358 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp-1.17.6 : ClpFactorization.cpp: error: double CoinFactorization::ftranCountInput_ is protected within this cont

  721930 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.10.5 : CbcCutGenerator.cpp: error: class CglTreeInfo has no member named parentSolver

  721932 - Assigned to Gentoo Science Related Packages
• sci-libs/lemon-1.3.1 : /.../ld: /.../libClp.so: undefined reference to CoinArrayWithLength::conditionalNew(long)

  722620 - Assigned to Gentoo Science Related Packages
• dev-libs/libtecla-1.6.3-r1 does not respect LDFLAGS

  723046 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh License appears to be incorrect

  723788 - Assigned to Licenses team
• sys-cluster/charm calls g++ directly

  725440 - Assigned to Nicolas Bock
• sci-libs/ogdi-4.1.0-r1 calls ar directly

  725618 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx fails tests

  725620 - Assigned to Gentoo Science Related Packages
• =dev-cpp/antlr-cpp-4.7.2 misses USE=static-libs and installs '.a' files

  726866 - Assigned to Gentoo Science Related Packages
• dev-python/blosc-1.11.1 : One or more CMake variables were not used by the project:

  727396 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 does not respect CFLAGS/LDFLAGS

  727962 - Assigned to Nicolas Bock
• sys-cluster/charm-6.8.2 installs shared libraries that lack a SONAME

  727964 - Assigned to Nicolas Bock
• sys-cluster/charm calls commands that do not exist (../bin/../include/conv-mach-gfortran.sh: line 21: and: command not found)

  727968 - Assigned to Nicolas Bock
• sci-libs/arprec-2.2.19 installs shared libraries that lack NEEDED entries

  727972 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9-r4 : I can't find file `epsf'.

  729634 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9 - qrdemoc.c:(.text.startup+0x94): undefined reference to `cholmod_l_norm_sparse'

  729636 - Assigned to Gentoo Science Related Packages
• <dev-python/numpy-1.19.0: pypy3 fortran tests fail

  729966 - Assigned to Gentoo Science Related Packages
• sci-libs/umfpack-5.7.9 fails tests

  731248 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.5.7 fails to compile: ordered comparison between pointer and zero ('int *' and 'int')

  731856 - Assigned to Gentoo Science Related Packages
• sci-libs/colpack-1.0.10 fails to compile: GraphColoring/GraphColoring.cpp:974:20: error: expected an OpenMP directive

  731900 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-6.5.0 fails to compile: ld.lld: error: can't create dynamic relocation R_X86_64_32 against local symbol in readonly segment

  731904 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec calls commands that do not exist (./configure: line 5219: ax_cxx_fma: command not found)

  731912 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 fails to compile: erfc.cpp:43:33: error: non-constant-expression cannot be narrowed from type

  731916 - Assigned to Gentoo Science Related Packages
• sci-libs/dealii-9.5.2-r1 installs compressed files (manpages, documentation)

  731918 - Assigned to Matthias Maier
• sci-libs/cqrlib fails to compile

  731928 - Assigned to Gentoo Science Related Packages
• =dev-python/metakernel-0.20.4 fails test on LANG=ru_RU.UTF-8

  732230 - Assigned to Gentoo Science Related Packages
• dev-python/simpy fails to compile

  732830 - Assigned to Gentoo Science Related Packages
• dev-python/simpy-3.0.13 fails tests

  738372 - Assigned to Gentoo Science Related Packages
• sci-calculators/tilp2-1.18-r1 installs metainfo files into /usr/share/appdata

  741212 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5-r1 fails tests

  741438 - Assigned to Gentoo Science Related Packages
• sci-libs/lemon-1.3.1 fails tests

  741512 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.3.2 fails tests

  741528 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3 fails tests

  741532 - Assigned to Gentoo Science Related Packages
• sci-misc/nco-4.5.1-r2 fails to compile: nco_omp.c:210:53: error: variable 'fp_stderr' must have explicitly specified

  741592 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9 fails tests

  741604 - Assigned to Gentoo Science Related Packages
• sci-visualization/grace-5.1.25_p17 does not respect LDFLAGS

  741640 - Assigned to Gentoo Science Related Packages
• sys-cluster/ampi-0_pre20140616 fails tests

  741933 - Assigned to Gentoo Science Related Packages
• dev-python/line-profiler-3.0.2 fails to compile

  742635 - Assigned to Gentoo Science Related Packages
• dev-python/scipy fails test test_bisplev_integer_overflow Fatal Python error: Segmentation fault

  743295 - Assigned to Gentoo Science Related Packages
• app-eselect/eselect-cblas: drop package, cblas is handled by eselect-blas

  747118 - Assigned to Gentoo Science Related Packages
• sci-libs/clblast: enable BLAS/CBLAS drop in replacement functionality

  747142 - Assigned to Gentoo Science Related Packages
• app-eselect/eselect-blas-0.1: drop package

  747325 - Assigned to Gentoo Science Related Packages
• dev-util/numdiff-5.9.0 QA Notice: Colliding files found by ecompress

  749897 - Assigned to Matthias Maier
• dev-python/scipy-1.8.1 fails to compile: source.c:(.text.startup+0x8c): undefined reference to `cblas_ddot'

  750320 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.2.22-r1: parallel build error: i686-pc-linux-gnu/bin/ld: cannot open output file /var/tmp/portage/sci-libs/pastix-5.2.2.22-r1/image//usr/lib/libmatrix_driver_32bit_nompi_smp_int_double_real_scotch_.so: No such file or directory

  754321 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl: symlink provider for BLAS CBLAS LAPACK LAPACKE no longer works

  754930 - Assigned to Gentoo Science Related Packages
• sci-libs/libticonv-1.1.5 :torture_ticonv.c:(.text.startup+<snip>): undefined reference to ticonv_iconv_open

  756718 - Assigned to Gentoo Science Related Packages
• dev-python/numpy: automagically linking against libflame.so

  757510 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.9.0 fails to build with existing ninja versions

  760153 - Assigned to Michał Górny
• dev-python/pyglet-1.5.14 fails to save images in alternative formats

  763171 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3 : sopalin/.../starpu_submit_tasks.c: error: expected expression before ; token

  769779 - Assigned to Gentoo Science Related Packages
• dev-python/matplotlib-3.3.4 bundles huge amount of fonts

  772947 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-1.2.1 fails test TestTimestampProperties.test_is_leap_year

  773610 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 - main.cpp: error: variable or field FC_FUNC_ declared void

  775293 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.0.1 calls python directly (dev-lang/python-exec[-native-symlinks])

  776391 - Assigned to Matthias Maier
• sci-libs/netcdf-cxx-4.3.1[examples] install useless .o in /usr/share

  779352 - Assigned to Gentoo Science Related Packages
• sci-mathematics/dsfmt-2.2.4 fails tests

  780933 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 fails to compile: x86_64-pc-linux-gnu-gfortran: error: unrecognized command-line option -frecord-gcc-switches.a; did you mean -frecord-gcc-switches?

  782622 - Assigned to Nicolas Bock
• dev-python/pandas-1.2.3-r1: fails one test on x86 (test_rolling_quantile_interpolation_options)

  786594 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.6.2: fails 1 test on ppc64 (TestNoData.test_nodata)

  788652 - Assigned to Gentoo Science Related Packages
• sci-libs/alglib-3.17.0 fails tests

  789750 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3[starpu] - /.../ld: sopalin/.../starpu_submit_tasks_ge.o:(.bss+<snip>): multiple definition of starpu_pastix_sched_po

  790425 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.9.0 does not respect LDFLAGS

  792384 - Assigned to Gentoo Science Related Packages
• sys-cluster/libquo-1.2.9 - topology-opencl.c: error: CL_DEVICE_TOPOLOGY_TYPE_PCIE_AMD undeclared (first use in this function)

  793710 - Assigned to Gentoo Science Related Packages
• dev-python/numpy: builds with SSE2 support on CPUs with no support (RuntimeError: NumPy was built with baseline optimizations: (SSE SSE2) but your machine doesn't support: (SSE2).)

  794187 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.7.4 QA Notice: The following files contain insecure RUNPATHs

  795822 - Assigned to Gentoo Science Related Packages
• sci-libs/gts-20121130 QA Notice: Missing soname symlink

  795831 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-2.2.15.0 QA Notice: Pre-stripped files found

  795837 - Assigned to Gentoo Science Related Packages
• dev-libs/libtecla-1.6.3 - install: enhance does not exist

  798267 - Assigned to Gentoo Science Related Packages
• sci-libs/lis-1.6.5 - /.../ld: fortran/.../libsaamg.a(lis_s_aggregate_mod.o): relocation R_X86_64_PC32 against symbol _data_structu

  800644 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 - multiple definition of `ATL_SetAtomicCount'; libatlas.a(ATL_SetAtomicCount_arch.o):ATL_SetAtomicCount_arch.c:(.text+0x0): first defined here

  801223 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3 calls ranlib directly

  802180 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - ebuild uses colon (:) as a sed delimiter

  802291 - Assigned to Nicolas Bock
• sys-cluster/ampi-0_pre20140616 - configure: error: in /.../ampi-0_pre20140616:

  804984 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-2.7 - FAIL: test_c11

  805578 - Assigned to Gentoo Science Related Packages
• dev-python/tables-3.6.1-r1: fails tests: tables.tests.test_index_backcompat.Indexes2_*

  805995 - Assigned to Python Gentoo Team
• sci-libs/ceres-solver-2.0.0 - /.../ld: /.../libunwind-x86_64.so: error adding symbols: file in wrong format

  806478 - Assigned to Gentoo Science Related Packages
• dev-python/matplotlib-3.4.2: test failures on hppa and sparc

  807679 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-1.3.1: tests fail with "ValueError: Buffer dtype mismatch, expected 'int64_t' but got 'int'" and similar

  809854 - Assigned to Gentoo Science Related Packages
• sci-libs/fftw-3.3.9 - configure: error: could not find mpi library for --enable-mpi

  810052 - Assigned to Gentoo Science Related Packages
• media-gfx/povray-3.7.0.0-r1: configure.ac:171: error: required file 'unix/config/ar-lib' not found

  810227 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 installs modules that are not byte-compiled

  810259 - Assigned to Gentoo Science Related Packages
• sys-cluster/ampi-0_pre20140616 - modified.c: error: MPI_ERR_ARG undeclared (first use in this function)

  810299 - Assigned to Gentoo Science Related Packages
• sci-libs/lis-1.6.5 - Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(8)).

  814338 - Assigned to Gentoo Science Related Packages
• sci-libs/ginkgo-1.4.0 - configure fails: Could not find a package configuration file provided by "hipblas"

  814845 - Assigned to Matthias Maier
• dev-python/scipy-1.8.1 does not respect LDFLAGS

  814950 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.8.1 installs pre-stripped files

  814953 - Assigned to Gentoo Science Related Packages
• sci-libs/libqalculate-4.1.1 calls cc directly

  815514 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.12.1-r1 does not respect CFLAGS

  817770 - Assigned to Gentoo Science Related Packages
• dev-perl/Bio-ASN1-EntrezGene-1.730.0[examples]: collides with sci-biology/bioperl-1.6.9

  818547 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 fails tests

  821565 - Assigned to Gentoo Science Related Packages
• dev-ml/gsl-ocaml-1.24.3-r1 - Fatal error: exception Sys_error(gsl_include.sexp: No such file or directory)

  822318 - Assigned to Gentoo Science Related Packages
• dev-cpp/tbb-2021.4.0 fails tests: - 119 - conformance_arena_constraints (Failed)

  825246 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9-r1 - spqr_parallel.cpp: fatal error: tbb/task_scheduler_init.h: No such file or directory

  825514 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.7.4: nc_test fails when optimization level is -O2

  827042 - Assigned to Gentoo Science Related Packages
• sci-libs/libxc-5.1.6: fails tests

  827334 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh: bundles dev-cpp/picojson

  828029 - Assigned to Matthias Maier
• dev-tcltk/tktreectrl-2.4.1 - configure: WARNING: unrecognized options: --disable-x

  828839 - Assigned to Gentoo musl team
• media-gfx/povray-3.7.0.0-r1 - vfesession.h: error: uint has not been declared

  828944 - Assigned to Gentoo musl team
• sci-libs/suitesparse to 5.10.1 (and related) version bump request (5.4.0 is blocking cleanup of sci-libs/cholmod-3.0.13)

  829502 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 - main.cpp: error: f_main was not declared in this scope

  829620 - Assigned to Gentoo Science Related Packages
• dev-perl/OpenGL-0.700.0-r1 fails to link with LLD because of /usr/lib in the link command line

  829749 - Assigned to Gentoo Science Related Packages
• dev-perl/PDL-2.63.0 fails to link with LLD because of /usr/lib in the link command line

  829750 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.3.1 - ncAtt.cpp:(.text+<snip>): undefined reference to nc_inq_attlen

  829795 - Assigned to Gentoo Science Related Packages
• sci-libs/adolc-2.7.2 - configure: error: in /.../ADOL-C-releases-2.7.2:

  830093 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - ckobjid.h: error: CkArrayIndexBase does not name a type

  830095 - Assigned to Nicolas Bock
• dev-python/scikit-image-0.19.3-r1 installs pre-stripped files

  830238 - Assigned to Gentoo Science Related Packages
• sci-libs/flann-1.9.1-r4: Fails in cmake, CMake Error at src/matlab/CMakeLists.txt:19 (get_property):

  830424 - Assigned to Gentoo Science Related Packages
• dev-cpp/tbb-2021.5.0 fails tests: 61 - test_eh_thread

  830489 - Assigned to Gentoo Science Related Packages
• sci-mathematics/z3-4.8.14 - CMake Error at .../FindPackageHandleStandardArgs.cmake:230 (message):

  830582 - Assigned to Michał Górny
• sci-libs/trilinos-13.4.0-r3 - /.../Kokkos_Stacktrace.cpp: fatal error: execinfo.h: No such file or directory

  830687 - Assigned to Gentoo musl team
• dev-libs/libtecla-1.6.3 installs files that contain insecure RUNPATHs

  830820 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.8.1-r1 fails to compile: zip.h:285:21: error: expected :, ,, ;, } or __attribute__ before str

  830895 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - Error> option: tcp is not supported in this version!

  831018 - Assigned to Nicolas Bock
• sci-libs/sundials-5.8.0 - ERROR: F2003 interface is not compatible with 32-bit indicies

  831110 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-1.22.1 fails to compile: error: Command "x86_64-pc-linux-gnu-gcc ..." failed with exit status 1

  831228 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4-r1 - checking if .../javac failed (see config.log, check the CLASSPATH?)

  831367 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4 - QA Notice: Unrecognized configure options: --with-mumps-incdir, --with-mumps-lib

  831368 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-alps-1.5.7 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831681 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcps-0.94.5 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831682 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-blis-0.94.8 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831683 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dip-0.95.0-r2 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831684 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-flopcpp-1.2.5 fails to compile: MP_set.hpp:212:9: error: no matching conversion for functional-style cast from const flopc::SUBSETREF to flopc::MP_domain

  831685 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 fails to compile: ld.lld: error: cannot find linker script P

  831686 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r1 fails to compile: ld.lld: error: cant create dynamic relocation R_X86_64_32 against local symbol in readonly segment; recompile object files with -fPIC or pass -Wl,-z,notext to allow text relocations in the output

  831725 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.23 fails to link with LLD because of /usr/lib in the link command line

  831799 - Assigned to Gentoo Science Related Packages
• sci-visualization/xd3d-8.3.1-r1 fails to compile: ld.lld: error: cant create dynamic relocation R_X86_64_32 against local symbol in readonly segment; recompile object files with -fPIC or pass -Wl,-z,notext to allow text relocations in the output

  831907 - Assigned to Gentoo Science Related Packages
• dev-libs/quazip-1.3-r2 fails tests: 1 - qztest_test (Failed)

  832093 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-1.3.4 - missing build dependency on cython

  832517 - Assigned to Gentoo Science Related Packages
• sci-calculators/tiemu-3.03-r1 fails to compile: ld: cannot find libintl.a: No such file or directory

  832741 - Assigned to Gentoo Science Related Packages
• sci-libs/clblas-2.12-r2 fails to compile: fileio.h:44:9: error: unknown type name u_int64_t

  832788 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.8.1-r1 - fails Test #183: nczarr_test_run_ut_mapapi

  832873 - Assigned to Gentoo Science Related Packages
• dev-python/matplotlib-3.5.1 fails tests: ImportError: Cannot load backend 'QtAgg'

  833099 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1 fails tests

  833789 - Assigned to Gentoo Science Related Packages
• dev-perl/Ace-1.920.0-r6 fails tests on MUSL

  834413 - Assigned to Gentoo Science Related Packages
• dev-python/nbdime-3.1.1 fails tests on MUSL

  834680 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1-r1 - common_thread.h: error: unknown type name cpu_set_t

  834726 - Assigned to Gentoo musl team
• sci-libs/flann-1.9.1-r5[octave] cannot find -loctinterp

  835021 - Assigned to Gentoo Science Related Packages
• dev-cpp/tbb-2021.5.0-r1 fails test "test_dynamic_link"

  835805 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc: uses variables banned in scope (VariableScope)

  836100 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl: uses variables banned in scope (VariableScope)

  836101 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp: uses variables banned in scope (VariableScope)

  836102 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp: uses variables banned in scope (VariableScope)

  836103 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi: uses variables banned in scope (VariableScope)

  836105 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils: uses variables banned in scope (VariableScope)

  836106 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol: uses variables banned in scope (VariableScope)

  836107 - Assigned to Gentoo Science Related Packages
• sci-misc/h5utils-1.13.1 - /.../ld: cannot find -loctinterp: No such file or directory

  836945 - Assigned to Gentoo Science Related Packages
• sci-libs/scalapack-2.1.0 fails tests on MUSL

  837035 - Assigned to Gentoo Science Related Packages
• sci-libs/p4est-2.8-r1 installs files into unexpected paths

  837044 - Assigned to Matthias Maier
• dev-python/anyio-3.6.1 fails tests

  837068 - Assigned to Gentoo Science Related Packages
• dev-lang/maude-3.1-r1 - /.../ld: cannot find -lcurses: No such file or directory

  837263 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 fails tests on MUSL

  837824 - Assigned to Nicolas Bock
• sci-mathematics/z3-4.8.16 - CMake Error at .../FindJava.cmake:171 (message):

  842615 - Assigned to Michał Górny
• sci-libs/ldl-2.2.6 installs libtool files (.la) without corresponding static libraries

  846695 - Assigned to Gentoo Science Related Packages
• sci-libs/kissfft-131.1.0 add Provides to .pc file

  847472 - Assigned to Gentoo Science Related Packages
• dev-python/ipyparallel-7.1.0 ImportError: cannot import name 'StaticModule' from 'setuptools.config'

  847784 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.10.5 installs libtool files (.la) without corresponding static libraries

  849704 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 installs libtool files (.la) without corresponding static libraries

  849707 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4 installs libtool files (.la) without corresponding static libraries

  849710 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 installs libtool files (.la) without corresponding static libraries

  849713 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.9 installs libtool files (.la) without corresponding static libraries

  849716 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 installs libtool files (.la) without corresponding static libraries

  849719 - Assigned to Gentoo Science Related Packages
• sci-libs/iml-1.0.5 installs libtool files (.la) without corresponding static libraries

  849926 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4-r1 installs libtool files (.la) without corresponding static libraries

  849929 - Assigned to Gentoo Science Related Packages
• sci-libs/superlu-4.3-r3 installs libtool files (.la) without corresponding static libraries

  849932 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.2-r301 installs libtool files (.la) without corresponding static libraries

  850940 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.8.1-r2 fails to compile on stable ppc: Could NOT find HDF5

  851660 - Assigned to Gentoo Science Related Packages
• sys-cluster/ampi-0_pre20140616 installs libtool files (.la) without corresponding static libraries

  852065 - Assigned to Gentoo Science Related Packages
• dev-python/line-profiler-3.5.1 one or more CMake variables were not used by the project

  856841 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-1.23.1 fails tests

  857102 - Assigned to Gentoo Science Related Packages
• dev-python/qiskit-aer-0.11.2-r1 one or more CMake variables were not used by the project

  858131 - Assigned to Gábor Oszkár Dénes
• sci-chemistry/mdtraj-1.9.7 fails to compile (lto): trr_header.h:28:5: error: type of do_trnheader does not match original declaration [-Werror=lto-type-mismatch]

  862387 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.9.1 installs files that contain insecure RUNPATHs

  862390 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5-r1 installs pre-stripped files

  862759 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.24 installs pkg-config files that do not respect libdir

  862948 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.9.1 does not respect CFLAGS

  863251 - Assigned to Gentoo Science Related Packages
• sci-mathematics/genius-1.0.27 - gtkpsfont.c: fatal error: gtk/gtk.h: No such file or directory

  863659 - Assigned to Gentoo Science Related Packages
• dev-cpp/taskflow-3.3.0 fails tests (MUSL)

  864172 - Assigned to Matthias Maier
• dev-cpp/tbb-2021.5.0-r1 fails to compile (MUSL): conformance_resumable_tasks.cpp:37:24: error: suspend is not a member of tbb::v1::task

  864175 - Assigned to Gentoo Science Related Packages
• dev-python/notebook-shim-0.1.0 fails tests (MUSL)

  865787 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 - CglLandPUtils.hpp: error: invalid cast from type std::nullptr_t to type OsiRowCut

  865921 - Assigned to Gentoo musl team
• sys-cluster/libquo-1.3.1-r2 fails tests

  867823 - Assigned to Gentoo Science Related Packages
• sys-cluster/libquo-1.3.1-r2 installs libtool files (.la) without corresponding static libraries

  867829 - Assigned to Gentoo Science Related Packages
• net-libs/cppzmq-4.6.0 fails to compile (MUSL): unrecognised option: verbosity

  872044 - Assigned to Gentoo Science Related Packages
• dev-python/anyio-3.6.1 failed to rebuild with USE=doc

  873220 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 fails tests (MUSL): OsiTestSolverInterfaceIO.cpp:425:22: error: invalid cast from type std::nullptr_t to type const char

  873259 - Assigned to Gentoo Science Related Packages
• sci-libs/dlib-19.24 fails tests (MUSL): new_allocator.h:158:33: error: void operator delete(void, std::size_t) called on pointer <unknown> with nonzero offset [8, 9223372036854775800] [-Werror=free-nonheap-object]

  873301 - Assigned to Gentoo Science Related Packages
• sci-libs/gts-20121130 installs gtk-doc into unexpected paths

  873316 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.6.0-r5 fails to compile (MUSL): ! LaTeX Error: File wrapfig.sty not found

  873409 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.1.0-r2 fails to compile (MUSL): loguru.cpp:98:18: fatal error: execinfo.h: No such file or directory

  873601 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-2.4.4.1 fails tests

  874285 - Assigned to Gentoo Science Related Packages
• sys-cluster/libquo-1.3.1-r2 fails to compile (MUSL): quo-private.h:123:5: error: unknown type name pid_t

  875599 - Assigned to Gentoo Science Related Packages
• dev-python/h5py-3.7.0 fails tests: OSError: Unable to create file (page buffering is disabled for parallel)

  875623 - Assigned to Python Gentoo Team
• dev-lang/gdl-1.0.1 fails tests: 176 - test_tic_toc.pro (Failed)

  875848 - Assigned to Gentoo Science Related Packages
• sci-calculators/tiemu-3.03-r2 calls cc directly

  876289 - Assigned to Gentoo Science Related Packages
• x11-libs/gl2ps-1.4.2 fails to compile (MUSL): !pdfTeX error: pdflatex (file tcrm1000): Font tcrm1000 at 600 not foun

  876475 - Assigned to Gentoo Science Related Packages
• dev-python/scipy 1.9.2 fails to build

  877515 - Assigned to Gentoo Science Related Packages
• dev-cpp/kokkos-3.7.0 fails tests: 4 - KokkosCore_UnitTest_LogicalSpaces (Failed)

  877527 - Assigned to Matthias Maier
• sci-visualization/quickplot-1.0.1_rc - mv: /.../quickplot.desktop and /.../quickplot.desktop are the same file

  877843 - Assigned to Gentoo Science Related Packages
• dev-python/nbconvert-7.1.0 fails tests

  878461 - Assigned to Gentoo Science Related Packages
• dev-libs/libtecla-1.6.3 - Fatal error: cant create normal_obj/direader.o: No such file or directory

  879793 - Assigned to Gentoo Science Related Packages
• sys-cluster/lmod-8.6.14 - /.../sh:line <snip>: .../Banner.lua: No such file or directory

  881003 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0-r1 installs more files with FEATURES=test

  881059 - Assigned to Michał Górny
• sci-libs/ogdi-4.1.0-r1 - /.../ld: cannot find -logdi: No such file or directory

  881083 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-2.4.5.0 - clang-15: error: linker command failed with exit code 1 (use -v to see invocation)

  881243 - Assigned to Gentoo Science Related Packages
• dev-cpp/antlr-cpp-4.7.2 - ninja: build stopped: subcommand failed.

  881317 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - machine.c: error: call to undeclared function EmergencyExit; ISO C99 and

  881421 - Assigned to Nicolas Bock
• sci-libs/atlas-3.10.2 fails to compile: xconfig: config.c:602: ProbeOS: Assertion iret failed

  882009 - Assigned to Gentoo Science Related Packages
• sys-cluster/lmod-8.6.14 - emake failed

  882095 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.9.3 - Wheel build failed

  882261 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-1.5.0: full-support should install dev-python/tabulate

  882287 - Assigned to Python Gentoo Team
• sci-libs/vtk-9.1.0-r4 fails to compile on ppc

  882405 - Assigned to Gentoo Science Related Packages
• sci-libs/metis-5.1.0-r5 installs files that contain insecure RUNPATHs

  882663 - Assigned to Gentoo Science Related Packages
• dev-python/anyio-3.6.1 fails tests (INTERNALERROR> AttributeError: 'NonBaseMultiError' object has no attribute '_exceptions'. Did you mean: 'exceptions'?)

  882771 - Assigned to Gentoo Science Related Packages
• dev-cpp/kokkos-3.7.0 installs files that contain insecure RUNPATHs

  883245 - Assigned to Matthias Maier
• sci-libs/mkl-2023.1.0.46342 installs files with unresolved SONAME dependencies

  885361 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 fails to compile (CLANG-STRICTER-SYSTEM): ATLrun.sh: line 4: 310 Segmentation fault $

  886063 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-2.4.6.0 bundles droid font

  886111 - Assigned to Gentoo Science Related Packages
• sci-libs/gerris-20131206-r1 fails to compile (CLANG-STRICTER-SYSTEM): Pointers cannot be stored in doubles on this architecture

  886277 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.2.2-r1 overwrites user's optimization (-O*)

  886317 - Assigned to Gentoo Science Related Packages
• sci-libs/libxc-5.1.7 fails to compile (CLANG-STRICTER-SYSTEM): libtool.m4: error: problem compiling FC test program

  886456 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.5.4 fails to compile (CLANG-STRICTER-SYSTEM): configure: error: Fortran could not compile .f90 files

  886459 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.23 fails to compile (CLANG-STRICTER-SYSTEM): configure: error: Fortran does not accept free-form source

  886462 - Assigned to Gentoo Science Related Packages
• sci-libs/superlu_mt-3.1-r1 fails to compile (CLANG-STRICTER-SYSTEM): psgssvx.c:580:2: error: call to undeclared function sp_colorder; ISO C99 and later do not support implicit function declarations [-Werror,-Wimplicit-function-declaration]

  886466 - Assigned to Gentoo Science Related Packages
• sci-visualization/quickplot-1.0.1_rc operates on file that does not exist: REPO_VERSION

  886605 - Assigned to Gentoo Science Related Packages
• sys-cluster/libquo-1.3.1-r2 installs less files with clang stricter

  887123 - Assigned to Gentoo Science Related Packages
• dev-util/rocminfo-6.1.2 adds -Werror flag on its own

  887385 - Assigned to Craig Andrews
• dev-python/metakernel-0.29.4 fails tests (DASH-SYSTEM)

  888143 - Assigned to Gentoo Science Related Packages
• dev-util/nvidia-cuda-toolkit-11.8.0-r3 - ldconfig: file /opt/cuda/lib64/lib{cusolver,cusolverMg,nppif}.so is truncated

  888309 - Assigned to Gentoo Science Related Packages
• dev-util/numdiff-5.9.0 fails to compile (DASH-SYSTEM): sh: 1: [: yes: unexpected operator

  888833 - Assigned to Matthias Maier
• media-gfx/asymptote-2.83 fails to compile (DASH-SYSTEM)

  889238 - Assigned to Andrey Grozin
• sci-libs/getdata-0.11.0 fails to compile (DASH-SYSTEM): ld: libgetdata.so: undefined reference to gd_coladd

  890429 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.5.4 fails tests (DASH-SYSTEM): FAIL: tst_fill_int64

  890503 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.5.2 fails to compile (DASH-SYSTEM): configure: 16116: Bad substitution

  890505 - Assigned to Gentoo Science Related Packages
• sci-libs/arpack-3.8.0 - configure: error: could not compile a Fortran MPI test program

  890511 - Assigned to Gentoo Science Related Packages
• sci-visualization/quickplot-1.0.1_rc fails to compile (DASH-SYSTEM): plot.c:26:10: fatal error: gdkx.h: No such file or directory

  890786 - Assigned to Gentoo Science Related Packages
• dev-libs/rocm-opencl-runtime-5.3.3: crash when trying to run Assassin's Creed Origins

  890859 - Assigned to Craig Andrews
• sci-libs/atlas-3.10.2 fails to compile (USR-MERGE-SYSTEM): error: inlining failed in call to ‘always_inline’ ‘_mm256_sub_*’: target specific option mismatch

  891739 - Assigned to Gentoo Science Related Packages
• dev-python/emcee-3.1.3 fails tests (LIBARCHIVE-SYSTEM): test_longdouble.py::test_longdouble_actually_needed[TempHDFBackend] Fatal Python error: Aborted

  892215 - Assigned to Gentoo Science Related Packages
• dev-python/netcdf4-1.5.8 fails tests (LIBARCHIVE-SYSTEM): python3.9: H5CS.c:224: H5CS_pop: Assertion fstack->nused > 0 failed

  892265 - Assigned to Gentoo Science Related Packages
• dev-python/plotly-5.15.0 installs files with broken symlink

  892561 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-6.5.0 fails to compile: f951: Fatal Error: Cannot rename module file test_utilities.mod0 to test_utilities.mod: No such file or directory

  892587 - Assigned to Gentoo Science Related Packages
• sci-misc/vitables-3.0.2_p4 fails tests: test_samples.py::TestTableOpening::test_opening_files Fatal Python error: Aborted

  892886 - Assigned to Gentoo Science Related Packages
• sci-libs/miopen: installs incomplate AMDGPU_TARGETS

  893242 - Assigned to Gentoo Science Related Packages
• dev-python/jupyter-console-6.5.0 fails tests: FAILED test_console.py::test_console_starts - pexpect.e..

  893808 - Assigned to Gentoo Science Related Packages
• dev-python/jupyter-client-8.0.2 fails tests (HARDENED-SYSTEM): RuntimeError: Kernel died before replying to kernel_info

  893810 - Assigned to Gentoo Science Related Packages
• dev-python/jupyter-server-2.2.1 fails tests (HARDENED-SYSTEM): BufferError: Existing exports of data: object cannot be re-sized

  893812 - Assigned to Gentoo Science Related Packages
• x11-libs/gl2ps-1.4.2 sandbox violation (LIBARCHIVE-SYSTEM)

  894506 - Assigned to Gentoo Science Related Packages
• dev-lang/maude-3.1-r1 fails to compile (MUSL-CLANG-SYSTEM): MersenneTwister.h:187:2: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  894798 - Assigned to Gentoo Science Related Packages
• dev-libs/rocm-opencl-runtime:5.3: clinfo: ROCclr-rocm-5.3.3/os/os_posix.cpp:305: static void amd::Os::currentStackInfo(unsigned char**, size_t*): Assertion `Os::currentStackPtr() >= *base - *size && Os::currentStackPtr() < *base && "just checking"' failed

  895286 - Assigned to Craig Andrews
• dev-cpp/tbb-2020.3 fails to compile (MUSL-CLANG-SYSTEM): proxy.cpp:27:47: error: token is not a valid binary operator in a preprocessor subexpression

  896202 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dip-0.95.0-r2 fails tests (HARDENED-SYSTEM)

  896408 - Assigned to Gentoo Science Related Packages
• dev-python/qiskit-aer: test failures with GLIBCXX_ASSERTIONS

  897758 - Assigned to Gábor Oszkár Dénes
• sci-libs/coinor-utils-2.11.4 fails to compile (MUSL-CLANG-SYSTEM): CoinOslC.h:37:15: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898126 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.4.1 fails to compile (MUSL-CLANG-SYSTEM): trilinos_klu_factor.c:506:19: error: call to undeclared function omp_get_num_threads; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

  898272 - Assigned to Matthias Maier
• sci-libs/gmsh-4.10.3 fails to compile (MUSL-CLANG-SYSTEM): edgegen.c:1680:18: error: call to undeclared library function strlen with type unsigned long (const char ); ISO C99 and later do not support implicit function declarations [-Wimplicit-function-de

  898280 - Assigned to Matthias Maier
• sci-libs/itpp-4.3.1-r2 fails to compile (MUSL-CLANG-SYSTEM): siso.h:668:5: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898284 - Assigned to Gentoo Science Related Packages
• dev-python/ubelt: bundles a ton of libraries

  898514 - Assigned to Gentoo Science Related Packages
• sci-visualization/gle-4.3.3-r3 fails to compile (MUSL-CLANG-SYSTEM): lzwencode.cpp:128:2: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898536 - Assigned to Andrey Grozin
• dev-util/rocm_bandwidth_test-5.7.1 adds -Werror flag on its own

  898900 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - libmemory-hooks-charmdebug.c: error: _malloc_hook undeclared (first use in this function)

  898948 - Assigned to Nicolas Bock
• sci-libs/coinor-cbc-2.10.5 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900561 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900563 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp-1.17.6-r1 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900565 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4-r1 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900567 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900569 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.9 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900571 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900573 - Assigned to Gentoo Science Related Packages
• sci-calculators/transcalc-0.14-r2 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900577 - Assigned to Gentoo Science Related Packages
• sci-libs/buddy-2.4-r1 has implicit function declarations in configure logs (MUSL-CLANG-SYSTEM)

  900695 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-1.24.2 fails to compile on s390 & ia64

  900751 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - ckobjid.h: error: const struct _ObjectID::s_array has no member named idx

  900755 - Assigned to Nicolas Bock
• sci-libs/netcdf-cxx-4.3.1-r1 fails tests

  901269 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 fails to compile: error: tag HTML_FOOTER: footer file footer.html does not exist

  901271 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2[doc]: failed to emerge

  901395 - Assigned to Gentoo Science Related Packages
• dev-perl/PDL-2.63.0 - emake failed

  902755 - Assigned to Gentoo Science Related Packages
• dev-util/Tensile-5.4.2-r1 - ninja: build stopped: subcommand failed.

  903602 - Assigned to Gentoo Science Related Packages
• sci-mathematics/z3-4.12.1 - -- Configuring incomplete, errors occurred!

  904398 - Assigned to Michał Górny
• dev-python/notebook-6.4.12 fails tests: "ValueError: No template sub-directory with name 'latex' found in the following paths:"

  905102 - Assigned to Gentoo Science Related Packages
• dev-lang/gdl-1.0.1-r2 fails to compile (MUSL-SYSTEM): file.cpp:454:22: error: aggregate lib::FindInDir(const DString&, const DString&)::stat64 statStruct has incomplete type and cannot be defined

  906353 - Assigned to Gentoo Science Related Packages
• dev-cpp/muParserX-4.0.11 fails to compile (MUSL-SYSTEM): mpDefines.h:70:22: error: int64_t does not name a type

  906354 - Assigned to Gábor Oszkár Dénes
• dev-python/pyamg-5.0.0 fails tests (MUSL-SYSTEM): test_air.py::TestAIR::test_upwind_advection <- test_air.py Fatal Python error: Aborted

  906781 - Assigned to Gentoo Science Related Packages
• dev-python/jupyter-server-proxy: version bump

  906817 - Assigned to Gentoo Science Related Packages
• dev-python/ubelt-1.2.4 fails tests (MUSL-SYSTEM)

  906846 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-1.24.2: tests TestUfunc::test_identityless_reduction_huge_array and TestKind::test_all fail

  907228 - Assigned to Gentoo Science Related Packages
• media-libs/jasper-4.0.0 fails tests (MUSL-SYSTEM): 5 - run_test_3 (Failed)

  907259 - Assigned to Michael Vetter
• media-libs/openimageio-2.4.6.0-r1 fails test - 50 - gif-broken (Failed)

  907345 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcp-1.4.4 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908309 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-flopcpp-1.2.5 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908310 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-netlib-1.2.9 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908311 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-smi-0.96.1 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908312 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.5.2 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908450 - Assigned to Gentoo Science Related Packages
• =sci-libs/trilinos-14.0.0: optimization CXXFLAGS not respected

  908835 - Assigned to Matthias Maier
• sci-libs/suitesparseconfig-7.0.0: fails to configure (Could NOT find BLAS (missing: BLAS_LIBRARIES)

  908851 - Assigned to Gentoo Science Related Packages
• sci-libs/cholmod-4.0.3 installs '.a' files without static-libs USE

  908858 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-3.0.3 installs '.a' files without static-libs USE

  908859 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - global-elfgot.C: error: #error Global-elfgot wont work properly under smp version: -swapglobals disabled

  909337 - Assigned to Nicolas Bock
• sci-misc/boinc-7.22.0 fails to compile with musl: undefined reference to `backtrace_symbols_fd`

  910391 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - cp: cannot stat charm: No such file or directory

  910427 - Assigned to Nicolas Bock
• dev-python/jupyterlab-server blocks dev-python/openapi-core upgrade

  911126 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-2.4.13.0 - /.../ivgl.cpp: error: glLoadIdentity was not declared in this scope

  911413 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-1.5.3: fails TestDataFramePlots::test_plain_axes test with matplotlib-3.7.0

  911622 - Assigned to Gentoo Science Related Packages
• dev-ml/gsl-ocaml-1.24.3-r1 - Failed to run command: dune build @install --display=short --profile release -j 5

  911874 - Assigned to Gentoo Science Related Packages
• sci-visualization/gnuplot-5.4.8 fails to compile: ld: libwx_gtk3u_core-3.2-gtk3.so: undefined reference to gdk_wayland_display_prefers_ssd

  912163 - Assigned to Ulrich Müller
• media-libs/libharu: examples (unconditionally) installed to datadir

  912244 - Assigned to Gentoo Science Related Packages
• sci-mathematics/cudd-3.0.0 - ! LaTeX Error: File pdftexcmds.sty not found.

  912765 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-2.4.13.0 fails to compile (GLIBC-2.38-SYSTEM): heifinput.cpp:9:10: fatal error: heif_cxx.h: No such file or directory

  912803 - Assigned to Gentoo Science Related Packages
• dev-python/qiskit-aer-0.11.2-r1 fails tests

  913219 - Assigned to Gábor Oszkár Dénes
• sci-misc/lttoolbox-3.7.1 - [clang] ../.../sorted_vector.hpp: error: no member named back_inserter in

  913651 - Assigned to Gentoo Science Related Packages
• sys-cluster/lmod-8.7.23 - The program "/usr/bin/lua5.1" must be in your path

  914062 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.11 fails to build with samurai

  914429 - Assigned to Michał Górny
• dev-python/notebook: unbundle mathjax-3.x?

  914447 - Assigned to Gentoo Science Related Packages
• dev-libs/rocm-opencl-runtime-5.5.1 fails test - RESULT_VARIABLE No such file or directory OUTPUT_VARIABLE:

  915074 - Assigned to Craig Andrews
• dev-python/jupyterlab-server-2.23.0: fails tests

  915094 - Assigned to Gentoo Science Related Packages
• dev-python/jupyter-lsp-2.2.0 fails tests

  915987 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-2.1.2: fails tests on big endian

  916502 - Assigned to Gentoo Science Related Packages
• dev-libs/rocm-device-libs-5.5.1 fails tests

  917430 - Assigned to Craig Andrews
• dev-python/numpy-1.26.2: Includes faulty float16 implementation on ppc64

  917544 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - [clang] lex.yy.c: error: ISO C++17 does not allow register storage class

  918963 - Assigned to Nicolas Bock
• dev-python/scikit-learn-1.3.2-r1 - sklearn/.../_dist_metrics.c: error: passing argument 1 of _pyx_f_7sklearn_7metrics_13_dist_metrics_19EuclideanDistanc

  919261 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 - [clang] ./VolVolume.hpp: error: ISO C++17 does not allow register storage class

  919381 - Assigned to Gentoo Science Related Packages
• sci-libs/hipFFT-5.7.1-r1: CMake Error at /usr/lib64/cmake/hip/FindHIP.cmake:105 (message): Specify HIP_ROOT_DIR

  919705 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0 fails to build with clang-17 and lto enabled

  919740 - Assigned to Michał Górny
• sci-libs/clblast is not tuned in the build process even if package name claims to be "tuned" blas

  919750 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 - [clang] OsiSolverInterfaceTest.cpp: error: no member named bind2nd in

  919825 - Assigned to Gentoo Science Related Packages
• media-gfx/povray-3.7.0.0-r4 - [clang] backend/.../matrices.cpp: error: ISO C++17 does not allow register

  919847 - Assigned to Gentoo Science Related Packages
• dev-python/pydevd-2.10.0 fails tests: AssertionError: TimeoutError (note: error trying to dump threads on timeout)

  920039 - Assigned to Gentoo Science Related Packages
• =sci-calculators/pcalc-5 fails tests on sparc

  920351 - Assigned to Gentoo Science Related Packages
• dev-util/hip-5.7.1-r1: programs hang/zombify instead of exiting

  920553 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r1: TypeError: buildSourceCodeObjectFile() missing 2 required positional arguments: 'outputPath' and 'kernelFile'

  920554 - Assigned to Gentoo Science Related Packages
• sci-libs/suitesparse does not packages RBio

  921100 - Assigned to Gentoo Science Related Packages
• sci-libs/mathgl-8.0.1-r2 fails to compile (GCC-14-SYSTEM): i:110: ==> Fatal error occurred, no output PDF file produced!

  921350 - Assigned to Gentoo Science Related Packages
• sci-misc/ncview-2.1.8 fails to compile (GCC-14-SYSTEM): dataedit.c:214:46: error: passing argument 2 of XawListChange from incompatible pointer type [-Wincompatible-pointer-types]

  921364 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 fails to compile (GCC-14-SYSTEM): x86_64-pc-linux-gnu-gfortran: error: argument to -fmessage-length= should be a non-negative integer

  921598 - Assigned to Nicolas Bock
• dev-python/numpy-1.26.2: fails TestKind::test_int test

  921960 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r1 FAILED: Tensile/lib/CMakeFiles/TensileHost.dir/source/hip/HipSolutionAdapter.cpp.o /usr/include/c++/v1/deque:436:67: error: expected ')'

  922071 - Assigned to Gentoo Science Related Packages
• dev-python/rpy2-3.5.14 fails tests: rpy2.rinterface_lib.embedded.RRuntimeError: X11 is not available

  922239 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.11.4 fails tests on x86

  922256 - Assigned to Gentoo Science Related Packages
• dev-cpp/tbb-2021.13.0 redefines _FORTIFY_SOURCE (MUSL-SYSTEM)

  922605 - Assigned to Gentoo Science Related Packages
• dev-python/pyamg-5.0.1: tests hang on x86

  922739 - Assigned to Gentoo Science Related Packages
• dev-python/ipyparallel-8.6.1 fails tests: TypeError: < not supported between instances of str and datetime

  923824 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-2.2.0-r1 fails tests: pandas/tests/frame/test_arrow_interface.py::test_dataframe_to_arrow - AttributeError: 'pyarrow.lib.RecordBatchReader' object has no attribute 'equals'

  923967 - Assigned to Gentoo Science Related Packages
• dev-python/tables-3.9.2: undefined symbol register_blosc2

  924223 - Assigned to Python Gentoo Team
• dev-python/bitarray-2.9.2 fails tests: MemoryError

  924280 - Assigned to Gentoo Science Related Packages
• dev-libs/rocm-comgr-5.7.1 fails tests: 16 - comgr_compile_device_libs_test (Failed)

  924281 - Assigned to Craig Andrews
• sci-libs/netcdf-4.9.2 installs pkg-config files that do not respect libdir

  924363 - Assigned to Gentoo Science Related Packages
• dev-python/pycuda-2024.1 fails to compile: integral_wrapper.hpp:73:31: error: integer value -1 is outside the valid range of values [0, 3] for the enumeration type udt_builtin_mixture_enum [-Wenum-constexpr-conversion]

  924401 - Assigned to Gentoo Science Related Packages
• sci-libs/rocSPARSE-5.7.1-r1 - CMake Error at clients/cmake_install.cmake:46 (file): file INSTALL cannot find rocsparse_common.yaml

  924446 - Assigned to Gentoo Science Related Packages
• media-gfx/asymptote-2.86 fails to compile: configure: error: Please install libz or zlib-devel on your system

  924923 - Assigned to Andrey Grozin
• sci-libs/p4est-2.8.5-r3 fails to compile: mv failed

  924972 - Assigned to Matthias Maier
• dev-python/scikit-learn-1.3.2-r1 fails tests

  924973 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-2.5.5.0 fails to compile: aarch64-unknown-linux-gnu-g++: error: unrecognized command-line option -mf16c

  924991 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r1: 40G build size

  925087 - Assigned to Gentoo Science Related Packages
• sci-libs/openblas-0.3.26-r1 fails to build on ppc: ../kernel/power/gemm_tcopy_4.S:164: Error: invalid operands (*UND* and *ABS* sections) for `*'

  925114 - Assigned to Michał Górny
• sci-libs/netcdf-4.9.2 fails to compile: semantics.c:605:60: error: passing argument 2 of ncaux_class_alignment from incompatible pointer type [-Wincompatible-pointer-types]

  925853 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 fails to compile: fft3.cpp:69:3: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  926266 - Assigned to Gentoo Science Related Packages
• sci-libs/buddy-2.4-r1 fails to compile: lexer.cxx:623:2: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  926267 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5-r1 fails to compile: expr: syntax error: unexpected argument 1000000

  926311 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-couenne-0.5.8-r1 fails to compile: dsyevx_wrapper.cpp:(.text+0x177): undefined reference to dsyev_

  926334 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 fails tests: make: [Makefile:510: test] Segmentation fault

  926335 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 installs pkg-config files that do not respect libdir

  926336 - Assigned to Gentoo Science Related Packages
• sci-mathematics/cudd-3.0.0 fails tests: FAIL: test_cudd.test 2 cudd extra

  926371 - Assigned to Gentoo Science Related Packages
• sci-visualization/fityk-1.3.2 fails tests: catch.hpp:6465:21: error: variable length array declaration not allowed at file scope

  926438 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.5.2 fails to compile: ld: libfastsum_threads.a(libfastsum_threads_la-fastsum.o): undefined reference to symbol omp_get_num_threads@@OMP_1.0

  926457 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-1.26.4 fails to compile: array_method.c:809:44: error: passing argument 3 of strided_loop from incompatible pointer type [-Wincompatible-pointer-types]

  926469 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.13.1 fails tests on ppc64 BE: scipy/ndimage/tests/test_morphology.py::TestNdimageMorphology::test_distance_transform_cdt05[*] - assert 28 == -21

  926623 - Assigned to Gentoo Science Related Packages
• =dev-libs/libf2c-20130927-r1 fetches file(s) that do not match recorded size

  927086 - Assigned to Gentoo Science Related Packages
• media-libs/sg-1.5 fails to compile: vgl.c:593:15: error: passing argument 3 of XtAppAddTimeOut from incompatible pointer type [-Wincompatible-pointer-types]

  927253 - Assigned to Gentoo Science Related Packages
• dev-python/scikit-learn-1.3.2-r1 fails tests

  927351 - Assigned to Gentoo Science Related Packages
• sci-libs/mumps-5.3.5-r1: won't compile with USE=mpi if openmpi doesn't have USE=fortran

  927635 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-15.0.0 fails to compile: Tpetra_Distributor.hpp:829:34: error: static assertion failed: Tpetra::Distributor::computeSends: sizeof(size_t) < sizeof(OrdinalType)

  928017 - Assigned to Matthias Maier
• sci-libs/coinor-alps-1.5.7 has implicit function declarations in configure logs

  928021 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcps-0.94.5 has implicit function declarations in configure logs

  928022 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-blis-0.94.8 has implicit function declarations in configure logs

  928023 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bonmin-1.8.8 has implicit function declarations in configure logs

  928024 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-couenne-0.5.8-r1 has implicit function declarations in configure logs

  928025 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dip-0.95.0-r2 has implicit function declarations in configure logs

  928026 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 has implicit function declarations in configure logs

  928027 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 has implicit function declarations in configure logs

  928029 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.9.0 fails tests

  928048 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 fails to compile: Could NOT find CBLAS (missing: CBLAS_WORKS)

  928057 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk: fails tests with: Loguru caught a signal: SIGFPE

  928127 - Assigned to Paul Zander
• dev-util/nvidia-cuda-toolkit-12.6.1 installs '.a' files without static-libs USE

  928310 - Assigned to Gentoo Science Related Packages
• sci-misc/ncview-2.1.10: version bump

  928372 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0-r1[eselect-ldso], sci-libs/openblas-0.3.26[eselect-ldso]: don't work on musl (was: do not install properly breaking "Blas-lapack-switch")

  928506 - Assigned to Michał Górny
• dev-python/scikit-image-0.23.0_rc2 fails tests with weird FP non-equality

  928600 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf: 4.3.1 version bump

  928910 - Assigned to Gentoo Science Related Packages
• sci-misc/apertium-3.8.3 - ../.../perceptron_spec.h: error: no template named unary_function

  928950 - Assigned to Gentoo Science Related Packages
• dev-perl/OpenGL-GLUT-0.720.0 - [slibtool] [clang] ld.lld: error: .../crti.o is incompatible with elf32-i386

  929090 - Assigned to Gentoo Science Related Packages
• dev-cpp/antlr-cpp: version missmatch with dev-java/antlr causes compile error on generated code

  929908 - Assigned to Gentoo Science Related Packages
• dev-python/rustworkx-0.14.2 fails tests (hang)

  930360 - Assigned to Gábor Oszkár Dénes
• sci-libs/atlas-3.10.2 Make.top:1: Make.inc: No such file or directory

  930954 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r2: error: option 'cf-protection=return' and 'cf-protection=branch' cannot be specified on this target

  931093 - Assigned to Gentoo Science Related Packages
• dev-python/ipyparallel-8.8.0 fails MPI tests and hang at « tests/test_mpi.py::test_signal_engines <- ipyparallel/tests/test_cluster.py »

  931237 - Assigned to Gentoo Science Related Packages
• dev-cpp/eigen-3.4.0-r2 fails tests: Test ( test_lazy_single<T,Rows,Cols,Depth,ColMajor,ColMajor,RowMajor>(rows,cols,depth) ) failed: verifyIsApprox(C+=A.lazyProduct(B), ref_prod(D,A,B)): Difference too large wrt tolerance 0.001, relative error is: 0.92997

  932646 - Assigned to Gentoo Science Related Packages
• dev-python/pycuda-2024.1 - numpy/arrayobject.h: No such file or directory

  932712 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2-r1 fails tests on ppc64 big-endian

  933141 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 one or more CMake variables were not used by the project

  934031 - Assigned to Matthias Maier
• sci-libs/blis-1.0 fails tests on arm: libblis: Invalid architecture id value.

  934524 - Assigned to Michał Górny
• dev-python/pandas-2.2.2-r1 fails tests: AssertionError: Attributes of DataFrame.iloc[:, 7] (column name="h") are different

  934575 - Assigned to Gentoo Science Related Packages
• dev-util/hip-6.1.2 does not respect CFLAGS

  934966 - Assigned to Gentoo Science Related Packages
• dev-util/hip-6.1.2 adds -Werror flag on its own

  934967 - Assigned to Gentoo Science Related Packages
• dev-util/Tensile-6.1.1 fails tests: FAILED test_.py::test_2sum_gsu_src - FileNotFoundError: [Errno 2] No such file or directory: 2sum_gsu_src.yaml

  934970 - Assigned to Gentoo Science Related Packages
• sci-libs/rocWMMA-6.1.1 fails to compile

  934980 - Assigned to Gentoo Science Related Packages
• app-shells/mpibash-1.3-r1 - [perl-5.40] [icu-75.1] [gcc-15] coll.c: error: passing argument 3 of reduction_like from incompatible pointer type [-Wincompatible-pointer-types]

  935067 - Assigned to Gentoo Science Related Packages
• dev-lang/gdl-1.0.4-r1: setup-wxwidgets should be called from src_configure

  935469 - Assigned to Gentoo Science Related Packages
• dev-util/hip-6.1.1 - [perl-5.40] [ncurses-6.5] [icu-75.1] -- Configuring incomplete, errors occurred!

  935562 - Assigned to Gentoo Science Related Packages
• dev-cpp/tbb-2021.9.0 fails tests on ppc: FATAL ERROR: test case CRASHED: SIGABRT - Abort (abnormal termination) signal

  936411 - Assigned to Gentoo Science Related Packages
• sci-mathematics/cudd-3.0.0 - [icu-75.1] [glibc-2.40] /.../string_view:256: constexpr const std::basic_string_view<_CharT, _Traits>::value_type& std::basic_string_view<_CharT,

  936649 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.11.41 fails to compile: probe_arch.c:201:33: error: passing argument 1 of strlen from incompatible pointer type [-Wincompatible-pointer-types]

  936672 - Assigned to Paul Zander
• sci-libs/atlas-3.11.41 - gcc: error: unrecognized command-line option ‘-V’

  936680 - Assigned to Gentoo Science Related Packages
• dev-util/hip-6.1.2 fails to compile: clang: error: invalid target ID gfx000; format is a processor name followed by an optional colon-delimited list of features followed by an disable sign (e.g., gfx908:sramecc+:xnack-)

  936865 - Assigned to Gentoo Science Related Packages
• dev-python/numexpr-2.10.1 QA Notice: setuptools warnings detected:

  936895 - Assigned to Python Gentoo Team
• sci-libs/getdata-0.11.0-r2 fails tests: FAIL: error_verbose_prefix

  937248 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-2.0.0 fails src_compile on ppc64 power9

  937757 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.14.0-r1 fails to compile: error: reference to non-static member function must be called

  937909 - Assigned to Gentoo Science Related Packages
• dev-libs/rocm-device-libs-6.1.2 fails test - 6 - compile_frexp_gfx600 (Failed)

  938163 - Assigned to Craig Andrews
• dev-libs/rccl-6.1.1 - /.../ibvsymbols.cc: error: use of undeclared identifier dlvsym

  938280 - Assigned to Gentoo musl team
• sci-libs/libcerf-1.17 installs pkg-config file with mismatched libdir (seen with sci-visualization/gnuplot-6.0.1)

  938472 - Assigned to Gentoo Science Related Packages
• x11-libs/xbae-4.60.4 - [ncurses-6.5] [llvm] mkdir: cannot create directory .libs: File exists

  938758 - Assigned to Gentoo Science Related Packages
• x11-libs/xbae-4.60.4-r1 - [ncurses-6.5] [llvm] leak2.c: error: incompatible integer to pointer conversion initializing

  939000 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.9.0 fails to compile: memory.h:156:11: error: intptr_t does not name a type

  939020 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 fails to compile: gtest-all.cc:9037:26: error: uintptr_t does not name a type

  939068 - Assigned to Matthias Maier
• dev-tex/minted-2.9 - [meson-9999] [gcc-15] ! LaTeX Error: File fvextra.sty not found.

  939133 - Assigned to TeX project
• dev-python/ipykernel: still requires <dev-python/pytest-8

  939418 - Assigned to Gentoo Science Related Packages
• sys-cluster/lmod-8.7.23 - [gcc-15] /.../sh:line <snip>: .../module.1: No such file or directory

  939433 - Assigned to Gentoo Science Related Packages
• dev-python/widgetsnbextension-4.0.13 QA Notice setuptools warnings detected: Package 'widgetsnbextension.static' is absent from the `packages` configuration.

  939710 - Assigned to Gentoo Science Related Packages
• sys-cluster/lmod-8.7.23 - [gcc-15] [slibtool] /.../install: target <snip>/lib: No such file or directory

  939770 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-2.2.1 fails to compile: quicksort.cpp:86:51: error: no matches converting function QSort_AVX512_SPR to type void ()(using TF = using np::meta::FixedWidth<short int>::Type = using std::conditional<true, short int, short int>::type = short

  939900 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile on loong: hdfi.h:1449:1: error: unknown type name 'No'

  940085 - Assigned to Gentoo Science Related Packages
• dev-python/traitlets-5.14.3 fails tests: FAILED test_argcomplete.py::TestArgcomplete::test_complete_custom_completers - AssertionError: assert {} > {DEBUG, INFO}

  940636 - Assigned to Gentoo Science Related Packages
• dev-python/anyio-4.8.0-r3 fails tests

  941427 - Assigned to Gentoo Science Related Packages
• dev-lang/cfortran-20210827 fails test - [libtool] [gcc-15] FAIL: fstr_test

  941630 - Assigned to Gentoo Science Related Packages
• sci-libs/blis-1.0 fails to compile: bli_x86_asm_macros.h:102:21: error: the register xmm15 cannot be clobbered in asm for the current target

  942061 - Assigned to Michał Górny
• sci-libs/coinor-bonmin-1.8.8 fails tests: Exception message: libhsl.so: cannot open shared object file: No such file or directory

  942062 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 fails to compile: sym_lp_solver.h:118:2: error: error Undefined or unknown LP solver

  942064 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 fails to compile: configure: error: Required package Cbc unavailable

  942068 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.24 uses automake in maintainer-mode

  942117 - Assigned to Gentoo Science Related Packages
• sci-libs/lemon-1.3.1-r2 fails to compile: ld: libClpSolver.so.1: undefined reference to f_read_ASL

  942120 - Assigned to Gentoo Science Related Packages
• sci-libs/p4est-2.8.6 fails tests

  942121 - Assigned to Matthias Maier
• sci-visualization/grace-5.1.25_p17 has implicit function declarations in configure logs

  942342 - Assigned to Gentoo Science Related Packages
• sci-libs/fftw-3.3.10 fails to compile: simd-neon.h:47:2: error: error compiling simd-neon.h requires -mfpu=neon or equivalent

  942588 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile: xdrposix.c:304:5: error: initialization of int32_t ()(struct __rpc_xdr , u_int) {aka int ()(struct __rpc_xdr , unsigned int)} from incompatible pointer type netlong ()() {aka long int ()()} [-Wincompatible-pointer

  942866 - Assigned to Gentoo Science Related Packages
• dev-cpp/eigen-3.4.0-r3[+test] - .../unsupported/test/cxx11_tensor_expr.cpp: In function 'void test_minmax_nan_propagation_templ()': .../unsupported/test/cxx11_tensor_expr.cpp:311:5: error: 'vec_all_nan' was not declared in this scope

  943401 - Assigned to Gentoo Science Related Packages
• dev-python/scikit-learn-1.5.2 - [ncurses-6.5] [gcc-15] x86_64-pc-linux-gnu-gcc: fatal error: cannot read spec file libgomp.spec: No such file or directory

  943554 - Assigned to Gentoo Science Related Packages
• =sci-libs/ogdi-4.1.0-r1 fails with gcc-15.0.0_pre20241117: ../vpfselec.c:103:4: error: number of arguments doesn’t match prototype

  943714 - Assigned to Gentoo Science Related Packages
• dev-perl/PDL-2.93.0 - [ncurses-6.5] [gcc-15] eigens.c: error: too many arguments to function sqrt

  943807 - Assigned to Gentoo Science Related Packages
• sci-visualization/ggobi-2.1.12 - [libtool] [gcc-15] defines.h: error: conflicting types for GGobi_destroyCurrentDisplay; have void(ggobid ) {aka void(struct _ggobid )}

  944030 - Assigned to Gentoo Science Related Packages
• dev-util/numdiff-5.9.0 fails to compile: getopt.c:264:47: error: too many arguments to function getenv

  944113 - Assigned to Matthias Maier
• sys-cluster/libquo-1.3.1-r2 - [libtool] Fatal Error: Cannot open included file mpif.h

  944156 - Assigned to Gentoo Science Related Packages
• dev-perl/Ace-1.920.0-r6 - [libtool] [gcc-15] call.c: error: too many arguments to function ((CALL )(calls->base + (sizetype)(calls->size i)))->func

  944207 - Assigned to Gentoo Science Related Packages
• sci-calculators/pcalc-5 - [ncurses-6.5] [gcc-15] pcalc.c: error: too many arguments to function (yyvsp + -16)->sym->u.iptr

  944361 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 fails to compile: cpthreads.c:274:15: error: too many arguments to function pt->startfn

  944418 - Assigned to Nicolas Bock
• sci-libs/superlu_mt-3.1-r1 fails to compile: psgssvx.c:415:19: error: conflicting types for slamch_; have double(char )

  944854 - Assigned to Gentoo Science Related Packages
• sci-libs/pgplot-5.2.2-r8 fails to compile: x2driv.c:192:25: error: too many arguments to function figdisp_sendcommand

  944857 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 fails to compile: Error: Type mismatch between actual argument at (1) and actual argument at (2) REAL(8))

  944859 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-1.1.6 fails to compile: build_libint.c:70:5: error: too many arguments to function punt

  944861 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4-r1 fails to compile: dylib_std.h:67:16: error: two or more data types in declaration specifiers

  944862 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile: array.c:493:21: error: too many arguments to function xlen_funct

  944863 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-csdp-6.2.0 fails to compile: calc_dobj.c:28:9: error: too many arguments to function ddot_

  944865 - Assigned to Gentoo Science Related Packages
• sci-calculators/pcalc-5 fails to compile: symbol.c:44:22: error: initialization of long double ()(void) from incompatible pointer type __attribute__((const)) long double ()(long double) [-Wincompatible-pointer-types]

  944938 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1-r1 fails to compile: module.h:241:37: error: initialization of int ()(void) from incompatible pointer type int ()(ArchCmplt const restrict, FILE const restrict) {aka int ()(struct ArchCmplt_ const restrict, FILE const restrict)} [-W

  945019 - Assigned to Gentoo Science Related Packages
• sci-visualization/xgraph-12.1-r5 fails to compile: xtb.c:203:34: error: too many arguments to function Malloc

  945021 - Assigned to Gentoo Science Related Packages
• dev-cpp/eigen: update to llvm-r2

  945341 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.3.0-r3 GUISupport/Qt/QVTKOpenGLWindow.cxx:255:43: error: 'GL_BACK_LEFT' was not declared in this scope

  945731 - Assigned to Paul Zander
• sci-libs/vtk-9.3.1[cgns] fails to compile with sci-libs/hdf5[-cxx] CMake error: "missing: HDF5_INCLUDE_DIRS"

  945964 - Assigned to Paul Zander
• sci-libs/gsl-2.7.1-r3 test fail : linalg : complex_LU_decomp, QR_update, cholesky_invert unscaled hilbert ; spmatrix ; rng

  946160 - Assigned to Gentoo Science Related Packages
• sci-libs/colamd: wrong SRC_URI

  946173 - Assigned to Gentoo Science Related Packages
• sci-libs/suitesparseconfig: wrong SRC_URI

  946174 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 fails to compile: setjmp64_.c:66:14: error: passing argument 1 of _longjmp from incompatible pointer type [-Wincompatible-pointer-types]

  946177 - Assigned to Nicolas Bock
• sci-visualization/quickplot-1.0.1_rc - cat: ./REPO_VERSION: No such file or directory

  946275 - Assigned to Gentoo Science Related Packages
• sci-libs/punc-1.5 fails to compile: sh: line 21: cd: umfpack: No such file or directory

  946333 - Assigned to Gentoo Science Related Packages
• media-gfx/asymptote-2.92 fails to compile: configure: error: C compiler cannot create executables (mixes CFLAGS and CXXFLAGS)

  946844 - Assigned to Andrey Grozin
• sci-misc/apertium-3.8.3 - checked.h: error: call of overloaded invalid_utf8(const unsigned char&) is ambiguous

  947118 - Assigned to Gentoo Science Related Packages
• dev-python/pycuda: version bump

  947202 - Assigned to Gentoo Science Related Packages
• media-gfx/asymptote-2.95 fails to compile with dev-lang/python-exec[-native-symlinks]

  947232 - Assigned to Andrey Grozin
• dev-python/matplotlib-3.10.0: fails tests with ffmpeg errors

  947493 - Assigned to Gentoo Science Related Packages
• sys-cluster/charm-6.8.2 - [gcc-15] conv-mach-gfortran.sh:line <snip>: and: command not found

  947893 - Assigned to Nicolas Bock
• sci-libs/libint-1.1.6 fails to compile: <command-line>: fatal error: cstdint: No such file or directory (mixes CFLAGS and CXXFLAGS)

  948099 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 fails to compile: KokkosSparse_spadd_handle.hpp:113:44: error: class KokkosSparse::SPADDHandle<lno_row_view_t_, lno_nnz_view_t_, scalar_nnz_view_t_, ExecutionSpace, MemorySpace> has no member named sort_option [-Wtemplate-body]

  948101 - Assigned to Matthias Maier
• sci-libs/lrslib-073 fails to compile: lrslib.h:154:23: error: passing argument 2 of signal from incompatible pointer type [-Wincompatible-pointer-types]

  948102 - Assigned to Gentoo Science Related Packages
• x11-misc/xaos needs a .desktop file

  948474 - Assigned to Gentoo Science Related Packages
• dev-cpp/tbb-2021.7.0-r1 fails to compile: utils_assert.h:37:5: error: abort was not declared in this scope

  948663 - Assigned to Gentoo Science Related Packages
• dev-lang/gdl-1.04-r1 has bug related to proper detection of python with numpy

  949409 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh-4.13.1-r1[gmm] - error: ‘MUMPS_solve’ is not a member of ‘gmm’

  949489 - Assigned to Matthias Maier
• dev-util/Tensile-6.3.2 - [glibc] [gcc-15] [ffmpeg] Reference.cpp: fatal error: omp.h file not found

  949526 - Assigned to Gentoo Science Related Packages
• sci-libs/rocRAND: error: no member named 'par_unseq' in namespace 'std::execution'

  949614 - Assigned to Sv. Lockal
• sci-libs/spqr-2.0.9-r4 - [texlive] [glibc] [gcc-15] [ffmpeg] ln: failed to create symbolic link ./spqr_user_guide.tex: File exists

  949624 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp fails to configure on 'error: Cannot find symbol(s) amd_defaults with AMD'

  949697 - Assigned to Gentoo Science Related Packages
• dev-cpp/antlr-cpp-4.13.2 - [meson] [gcc-15] One or more CMake variables were not used by the project:

  949844 - Assigned to Gentoo Science Related Packages
• sys-cluster/lmod-8.7.55 fails tests (lua: /usr/share/lua/5.1/posix/init.lua:23: module 'posix.glob' not found:)

  949869 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.15.2: can't crosscompile, tries to use dev-python/numpy from CBUILD

  950050 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.15.2 can't crosscompile : fatal error: pybind11/pybind11.h: No such file or directory

  950205 - Assigned to Gentoo Science Related Packages
• sci-libs/fftw - ambiguous use flag "threads" (lacks description)

  950329 - Assigned to Gentoo Science Related Packages
• sci-libs/ceres-solver-2.2.0-r1 has an automagic dependency on sci-libs/metis

  951158 - Assigned to Gentoo Science Related Packages
• dev-perl/PDL-2.63.0-r1 - fails t/gsl_linalg.t (Wstat: 11 (Signal: SEGV) Tests: 4 Failed: 0)

  951295 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.14.4_p3-r1: Include dirs contain /var/tmp/portage

  951537 - Assigned to Gentoo Science Related Packages
• net-libs/zmqpp-4.2.0-r1 - [gcc-15] [cmake-4] -- Configuring incomplete, errors occurred!

  951835 - Assigned to Gentoo Science Related Packages
• dev-lang/gdl: needs porting to Python 3.13+

  952294 - Assigned to Gentoo Science Related Packages
• dev-python/chart-studio: needs porting to Python 3.13+

  952323 - Assigned to Gentoo Science Related Packages
• dev-python/plotly-geo: needs porting to Python 3.13

  952361 - Assigned to Gentoo Science Related Packages
• dev-python/pyamg: needs porting to Python 3.13

  952366 - Assigned to Gentoo Science Related Packages
• dev-python/pycuda: needs porting to Python 3.13

  952369 - Assigned to Gentoo Science Related Packages
• dev-python/simpy: needs porting to Python 3.13

  952401 - Assigned to Gentoo Science Related Packages
• sci-libs/ceres-solver: needs porting to Python 3.13

  952668 - Assigned to Gentoo Science Related Packages
• sci-libs/dlib: needs porting to Python 3.13

  952670 - Assigned to Gentoo Science Related Packages
• sci-libs/libsvm: needs porting to Python 3.13

  952674 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix: needs porting to Python 3.13

  952678 - Assigned to Gentoo Science Related Packages
• sci-misc/apertium: needs porting to Python 3.13

  952692 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0-r1 fails to build with distcc: main.c:(.text.startup+0xa): undefined reference to `VerifyFortran'

  952947 - Assigned to Michał Górny
• dev-util/numdiff-5.9.0 - [cmake-4] QA Notice: Colliding files found by ecompress:

  954280 - Assigned to Matthias Maier
• sci-visualization/grace-5.1.25_p18 - QA Notice: Files built without respecting LDFLAGS have been detected

  954349 - Assigned to Gentoo Science Related Packages
• sci-mathematics/cudd-3.0.0 - [meson] sh:line <snip>: latex: command not found

  955052 - Assigned to Gentoo Science Related Packages
• x11-libs/gl2ps-1.4.2-r1 - [cmake-4] -- Configuring incomplete, errors occurred!

  955250 - Assigned to Gentoo Science Related Packages
• dev-util/nvidia-cuda-toolkit-12.8.1[debugger]: Failure to build: USE Flag 'python_targets_python3_10' not in IUSE for dev-util/nvidia-cuda-toolkit-12.8.1

  955281 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-1.26.4 fails to build 'numpy/math.pxd' not found

  955596 - Assigned to Python Gentoo Team
• sci-libs/flann-1.9.2_p20221027-r1 - failed to emerge with USE=mpi

  955662 - Assigned to Gentoo Science Related Packages
• media-gfx/tachyon-0.99.5 - [meson] QA Notice: Symbolic link /.../vol points to /.../vol which does not exist.

  955843 - Assigned to Alexey Shvetsov
• dev-python/numpy-2.2.5 - numpy-2.2.5/numpy/_core/src/common/pythoncapi-compat/pythoncapi_compat.h:1588:12: error: ‘_PyBytes_Join’ was not declared in this scope; did you mean ‘PyBytes_Join’?

  955991 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.24 - QA Notice: pkg-config files not respecting libdir found

  956302 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.4.2 upgrade from stable sci-libs/vtk-9.3.1 compile tests failure

  956619 - Assigned to Paul Zander
• sys-cluster/libquo-1.3.1-r2 - [meson] ./configure:line <snip>: which: command not found

  956754 - Assigned to Gentoo Science Related Packages
• media-libs/opentimelineio-0.17.0 - [gcc-16] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957289 - Assigned to Paul Zander
• sci-visualization/ggobi-2.1.12 - [gcc-16] tour_pp.h: error: expected identifier or ( before _typeof

  957406 - Assigned to Gentoo Science Related Packages
• dev-cpp/antlr-cpp-4.13.2-r1 - [gcc-16] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957417 - Assigned to Gentoo Science Related Packages
• dev-cpp/taskflow-3.10.0 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957421 - Assigned to Matthias Maier
• sci-libs/plplot-5.15.0_p15 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957438 - Assigned to Gentoo Science Related Packages
• net-libs/cppzmq-4.10.0 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957453 - Assigned to Gentoo Science Related Packages
• dev-cpp/eigen-3.4.0-r3 - [gcc-16] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957573 - Assigned to Gentoo Science Related Packages
• sci-libs/metis-5.2.1-r2 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957609 - Assigned to Gentoo Science Related Packages
• sci-libs/gklib-5.1.1_p20230327-r1 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957610 - Assigned to Gentoo Science Related Packages
• dev-libs/rocr-runtime-6.4.1 - [gettext] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  958188 - Assigned to Craig Andrews
• dev-python/pandas-2.2.3[test] Failing install because of stray top-level files in site-packages

  958517 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.1: install library with undefined references, breaking dev-python/numpy configure

  958884 - Assigned to Michał Górny
• sci-mathematics/z3-4.15.2 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  959114 - Assigned to Michał Górny
• dev-perl/Lab-Measurement-3.823-r2 fails test - Result: FAIL

  959337 - Assigned to Andreas K. Hüttel
• sci-libs/netcdf-cxx-4.3.1-r1 fails to compile against sci-libs/netcdf-4.9.3-r1 even if USE=hdf5 enabled

  959385 - Assigned to Gentoo Science Related Packages
• sys-cluster/lmod-8.7.60 fails test - ERROR: sys-cluster/lmod-8.7.60::gentoo failed (test phase):

  959400 - Assigned to Gentoo Science Related Packages
• dev-libs/rccl-6.4.1 - [meson] [jdk25] [gettext] [gcc-16] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  959584 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-3.0.6.1 - [gettext] [gcc-16] ivgl_ocio.cpp: error: GL_RGB32F_ARB was not declared in this scope

  960010 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh CMake Error at CMakeLists.txt:754 (message): Could not find GLU: disabling OpenGL support

  960011 - Assigned to Matthias Maier
• media-libs/jasper-4.2.4: failed (test phase)

  960259 - Assigned to Michael Vetter
• sci-libs/hipBLASLt: build causes out-of-memory even with 64GB RAM and -j1

  960513 - Assigned to Sv. Lockal
• media-gfx/tachyon-0.99.5 - [gcc-16] FileNotFoundError: [Errno 2] No such file or directory: bdocs/.../.

  960640 - Assigned to Alexey Shvetsov
• sci-calculators/pcalc-5 - FAILED (pcalc.012.at:1)

  960880 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-3.0.8.1 fails test - [meson] [gcc-16] 43 - texture-interp-closest (Failed)

  960952 - Assigned to Gentoo Science Related Packages
• media-libs/openimageio-3.0.8.1 - [jdk25] [gcc-16] QA Notice: The following unexpected files/directories were found

  961050 - Assigned to Gentoo Science Related Packages
• dev-python/numpy-2.3.2 fails test test_npy_uintp_type_enum: "ModuleNotFoundError: No module named 'checks'"

  961278 - Assigned to Gentoo Science Related Packages
• dev-python/rustworkx-0.17.1 - [gcc-16] QA Notice: found Cargo.toml file which specifies rust-version="1.79"

  961457 - Assigned to Gábor Oszkár Dénes
• dev-perl/Bio-Graphics-2.400.0-r2 fails test - [gcc-16] Result: FAIL

  961539 - Assigned to Gentoo Science Related Packages
• dev-cpp/taskflow-3.10.0 fails test - [gcc-16] 1019 - InclusiveScan.string.1thread (Failed)

  961562 - Assigned to Matthias Maier
• media-gfx/asymptote-3.05 fails tests

  961812 - Assigned to Andrey Grozin
• dev-util/nvidia-cuda-toolkit-13.0.0 version bump

  961892 - Assigned to Gentoo Science Related Packages
• sci-visualization/labplot: version bump request to 2.12.1

  962036 - Assigned to Andreas K. Hüttel
• sci-libs/rocSOLVER-6.4.3 fails to compile with rocBLAS-9999

  962432 - Assigned to Sv. Lockal
• sci-visualization/xgraph-12.1-r5 - [meson] [jdk25] [gcc-16] hard_devices.c: error: conflicting types for getenv; have char (void)

  962486 - Assigned to Gentoo Science Related Packages
• dev-python/jupyterlab-lsp: version bump

  962735 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.16.2 fails test - _cython_examples/extending.pyx:6:8: 'scipy/linalg.pxd' not found

  962898 - Assigned to Gentoo Science Related Packages
• dev-python/blosc-1.11.3 fails test - [gcc-16] FAIL: compress_ptr (blosc.toplevel)

  962901 - Assigned to Gentoo Science Related Packages
• dev-lang/cfortran-20210827 fails test - [gcc-16] e2/e2.c: error: too many arguments to function easy_; expected 0, have 2

  963032 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh-4.14.0 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4

  963573 - Assigned to Matthias Maier
• sci-libs/parmetis-4.0.3_p20230326-r1 - [jdk25] [ffmpeg8] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  963577 - Assigned to Gentoo Science Related Packages
• sci-libs/libqalculate-5.7.0: doxygen: undefined symbol

  963582 - Assigned to Christopher Fore
• sci-libs/gmsh-4.14.1 - fatal error: ap.h: No such file or directory

  963599 - Assigned to Matthias Maier
• dev-libs/rocr-runtime-6.4.3: /var/tmp/portage/dev-libs/rocr-runtime-6.4.3/work/ROCR-Runtime-rocm-6.4.3/runtime/hsa-runtime/core/util/utils.h:369:5: error: ‘_mm_clflush’ was not declared in this scope

  963684 - Assigned to Craig Andrews
• sys-cluster/lmod-8.7.60 - [jdk25] [meson] [portage-9999] make: [makefile:379: spiderCacheSupport] Error 1

  963934 - Assigned to Gentoo Science Related Packages
• dev-python/scikit-build-0.18.1 fails test - [ffmpeg8] [gcc-16] [nasm-3] E AssertionError: assert Error: could not load cache in Error: not a CMake build directory (missin

  964015 - Assigned to Gentoo Science Related Packages
• sci-libs/openblas-0.3.30-r3 - failed to set dynamic section sizes: bad value

  964049 - Assigned to Michał Górny
• dev-python/pyglet-2.1.9 fails test - collecting ... terminate called after throwing an instance of 'std::out_of_range' what(): vector::_M_range_check: __n (which is 4294967295) >= this->size() (which is 0)

  964361 - Assigned to Gentoo Science Related Packages
• dev-util/rocm-smi-6.4.3-r1 - [boost-1.89] [gcc-16] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964481 - Assigned to Craig Andrews
• dev-build/rocm-cmake-6.4.3 - [ffmpeg8] [gcc-16] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964534 - Assigned to Gentoo Science Related Packages
• dev-util/rocminfo-6.4.3 - [gcc-16] [nasm-3] [portage-9999] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964617 - Assigned to Craig Andrews
• sci-libs/bliss-0.77-r1 - [boost-1.89] [gcc-16] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964638 - Assigned to Gentoo Science Related Packages
• dev-libs/rocdbgapi-6.4.3 - [boost-1.89] [gcc-16] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964733 - Assigned to Sv. Lockal
• sci-libs/lmfit-9.0-r1 - [ffmpeg8] [jdk25] [meson] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964777 - Assigned to Gentoo Science Related Packages
• sci-calculators/calcoo-1.3.18-r2: hangs at startup

  964797 - Assigned to Gentoo Science Related Packages
• dev-libs/roct-thunk-interface-7.0.2 fails test - [boost-1.89] [ffmpeg8] [portage-9999] ERROR: dev-libs/roct-thunk-interface-7.0.2::gentoo failed (test phase):

  964963 - Assigned to Sv. Lockal
• sci-geosciences/qmapshack-1.18.0 - [boost-1.89] [gcc-16] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964967 - Assigned to Andrey Grozin
• dev-libs/roct-thunk-interface-7.0.2 - [ffmpeg8] [gcc-16] [nasm-3] [portage-9999] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  964974 - Assigned to Sv. Lockal
• dev-util/amdsmi-7.0.2 fails test - [boost-1.89] [ffmpeg8] [portage-9999] [ FAILED ] 19 tests, listed below:

  965007 - Assigned to Sv. Lockal
• sci-libs/gmsh-4.14.1 - error: ‘MUMPS_solve’ is not a member of ‘gmm’

  965048 - Assigned to Matthias Maier
• sci-libs/hipBLASLt-7.0.2-r1 fails to build on small PORTAGE_TMPDIR (<16 GiB)

  965052 - Assigned to Sv. Lockal
• sci-visualization/labplot-2.11.1-r1 in bundled Qt-Advanced-Docking-System: QA Notice: Compatibility w/ CMake < 3.16 will be removed in future ECM release.

  965103 - Assigned to Andreas K. Hüttel
• sci-electronics/fasthenry-3.0.24.03.14 - [gcc-16] [portage-9999] mulDo.c:85:(<snip>) undefined reference to simd_mac

  965141 - Assigned to Andreas K. Hüttel
• sci-electronics/fasthenry-3.0.24.03.14 - zbuf.c: error: type of axes does not match original declaration [-Werror=lto-type-mismatch]

  965143 - Assigned to Andreas K. Hüttel
• dev-libs/mmtf-cpp-1.1.0-r1 - [gcc-16] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  965145 - Assigned to Gentoo Science Related Packages
• sci-chemistry/mdtraj-1.10.3 - [gcc-16] [portage-9999] mdtraj/.../trr_header.h: error: type of do_trnheader does not match original declaration [-Werror=lto-type-mismatch]

  965274 - Assigned to Gentoo Science Related Packages
• dev-libs/pegtl-3.2.8-r1 - [boost-1.89] [gcc-16] [portage-9999] demangle.hpp: error: static assertion failed

  965280 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.4.2-r2 - failed to rebuild after system update - error: '/usr/lib64/libtbb.so.12.15', needed by 'lib64/libvtkIOOCCT-9.4.so.9.4', missing

  965312 - Assigned to Paul Zander
• sci-visualization/quickplot has missing dependency

  965341 - Assigned to Gentoo Science Related Packages
• app-text/rman has incorrect LICENSE

  965425 - Assigned to Gentoo Science Related Packages
• dev-libs/cutlass-4.2.1 - Error generating library instances

  965723 - Assigned to Paul Zander
• dev-cpp/tbb-2022.3.0 - [jdk26] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  965731 - Assigned to Gentoo Science Related Packages
• sci-libs/libaec-1.1.4: fails tests on ppc

  966099 - Assigned to Gentoo Science Related Packages
• sci-libs/plplot-5.15.0_p15-r1 - [jdk26] plplotcPYTHON_wrap.c: error: implicit declaration of function PyArray_FromDimsAndData [-Wimplicit-function-declaration]

  966315 - Assigned to Gentoo Science Related Packages
• dev-python/scipy-1.16.3 fails test - E subprocess.CalledProcessError: Command [meson, compile, -vv] returned non-zero exit status 1.

  966403 - Assigned to Gentoo Science Related Packages
• dev-perl/File-Map-0.710.0 - [portage-9999] QA Notice: Files built without respecting LDFLAGS have been detected

  966635 - Assigned to Gentoo Science Related Packages
• dev-util/rocm_bandwidth_test-7.1.0 fails to compile for AMDGPU_TARGETS: gfx1103

  966709 - Assigned to Sv. Lockal
• dev-python/qiskit-aer is blocking cleanup of <dev-cpp/nlohmann_json-3.10.3

  966712 - Assigned to Gábor Oszkár Dénes
• dev-python/numpy-2.3.2 failed to emerge

  966717 - Assigned to Gentoo Science Related Packages
• sci-libs/ceres-solver-2.2.0 fix cuda 13

  966733 - Assigned to Gentoo Science Related Packages
• dev-libs/cudnn-9.12 version bump (required to build opencv 4.12 with cuda 13)

  966869 - Assigned to Gentoo Science Related Packages
• dev-util/rocm-smi-7.1.0 crashes when trying to get gpu frequency

  966956 - Assigned to Sv. Lockal
• sci-libs/openblas: NUM_PARALLEL, NUM_THREADS defaults don't play well w/ no overcommit (Excessive commit charge (8GB) for every BLAS user after switch to sci-libs/flexiblas-3.5.0)

  967026 - Assigned to Michał Górny
• sci-libs/rocPRIM-7.1.0 - [boost-1.89] [gcc-16] [sphinx-9] QA Notice: One or more CMake variables were not used by the project:

  967224 - Assigned to Sv. Lockal
• sci-libs/hipCUB-7.1.0 - [boost-1.89] [gcc-16] [sphinx-9] QA Notice: One or more CMake variables were not used by the project:

  967225 - Assigned to Sv. Lockal
• sci-libs/rocPRIM-7.1.0 - [boost-1.89] [gcc-16] [sphinx-9] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  967229 - Assigned to Sv. Lockal
• dev-python/vpython: uses dev-python/autobahn

  967369 - Assigned to Andrey Grozin
• sci-libs/netcdf-4.9.3-r2 - [gcc-16] [meson] install-fortran.md:230: error: Reached end of file while still searching closing of a verbatim block starting at line 215 (war

  967490 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2-r1 - [gcc-16] [meson] error: source /.../internal.md is not a readable file or directory..kipping.

  967491 - Assigned to Gentoo Science Related Packages
• net-libs/cppzmq-4.11.0 - [gcc-16] [meson] QA Notice: One or more CMake variables were not used by the project:

  967552 - Assigned to Gentoo Science Related Packages
• x11-libs/qwt-6.3.0 - failed to emerge with USE=doc

  967754 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.1-r2: fails tests on hppa (sci-libs/flexiblas-3.5.0: fails CBLAS-xscblat3 test on hppa)

  967848 - Assigned to Michał Górny
• sci-libs/pastix: 6.4.0 version bump

  968064 - Assigned to Paul Zander
• sci-libs/openblas-0.3.30-r5: fails to build on x86, Error: invalid operands (*UND* and *ABS* sections) for `*'

  968113 - Assigned to Michał Górny
• dev-libs/libtecla-1.6.3-r1 - [boost-1.89] enhance.c:(<snip>) undefined reference to gl_replace_prompt

  968140 - Assigned to Gentoo Science Related Packages
• sci-visualization/gle-4.3.8-r1 - [boost-1.89] [sphinx-9] gle-poppler.cpp: fatal error: poppler.h: No such file or directory

  968258 - Assigned to Andrey Grozin
• sci-libs/lapack-3.12.1-r3: Cannot parse module file for module 'omp_lib': Source file 'omp_lib.mod' was not found

  968294 - Assigned to Michał Górny
• dev-python/ipyparallel-9.0.2 still requires ipykernel<7

  968358 - Assigned to Gentoo Science Related Packages
• sci-libs/plplot-5.15.0_p15-r1 - [jdk26] QA Notice: pkg-config files not respecting libdir found

  968529 - Assigned to Gentoo Science Related Packages
• dev-util/amdsmi-7.1.1 - [gcc-16] frequencies_read.cc: error: setw is not a member of std

  968629 - Assigned to Sv. Lockal
• sci-libs/lapack-3.12.1-r2: miscompiled by >=sys-devel/gcc-15 with -fno-vect-cost-model

  968754 - Assigned to Gentoo Toolchain Maintainers
• dev-python/scipy-1.16.3: error command

  968848 - Assigned to Gentoo Science Related Packages
• dev-python/qiskit-2.3.0 - [gcc-16] [portage-9999] QA Notice: found Cargo.toml file which specifies edition="2024"

  968853 - Assigned to Gábor Oszkár Dénes
• sci-misc/boinc-8.2.4 initscript relies on runuser which might be unavailable

  968863 - Assigned to Gentoo Science Related Packages
• sci-libs/nanoflann-1.7.1 - [meson] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  969078 - Assigned to Matthias Maier
• sci-libs/flann-1.9.2_p20221027-r1 - [sphinx-9] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  969079 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.5.2 IUSE ffmpeg, mpi, views and truetype appear to require USE=rendering

  969110 - Assigned to Paul Zander
• dev-libs/libtecla-1.6.3-r1 - [boost-1.89] [meson] QA Notice: The following files contain insecure RUNPATHs

  969146 - Assigned to Gentoo Science Related Packages
• sci-visualization/gle-4.3.8-r1 - [meson] [sphinx-9] Error copying file /.../glerc to /.../glerc.

  969147 - Assigned to Andrey Grozin
• dev-python/griddataformats-1.1.0 - [portage-9999] QA Notice: The following Python packages were installed with

  969180 - Assigned to Gentoo Science Related Packages
• dev-qt/qtpbfimageplugin added to wrong category

  969293 - Assigned to Andrey Grozin
• sci-libs/openblas-0.3.31 - linktest.c:(<snip>) undefined reference to openblas_set_threads_callback_function

  969390 - Assigned to Michał Górny
• dev-python/plotly: incorrect dependencies

  969471 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl-2025.3.1.8 - [boost-1.90] [glibc-2.43] [meson] QA Notice: Unresolved soname dependencies:

  969700 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.3-r2 - [glibc-2.43] [meson] -- Configuring incomplete, errors occurred!

  969834 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.3.1-r1 - undefined reference to `nc_set_log_level'

  969852 - Assigned to Gentoo Science Related Packages
• dev-util/nvidia-cuda-toolkit-12.9.1-r1: Set NVCCFLAGS/NVCC_CCBIN in /etc/env.d

  970022 - Assigned to Gentoo Science Related Packages
• sci-chemistry/MDAnalysis-2.9.0 - [glibc-2.43] QA Notice: The following unexpected files/directories were found

  970032 - Assigned to Gentoo Science Related Packages
• sci-chemistry/MDAnalysis-2.9.0 - [glibc-2.43] QA Notice: Package seems to be missing a BDEPEND on dev-python/cython.

  970033 - Assigned to Gentoo Science Related Packages
• dev-python/numpy: segfault in libopenblas.so on import

  970253 - Assigned to Gentoo Science Related Packages

Stabilization Bug Reports

• sci-libs/roc{FFT,RAND,SPARSE,Thrust,PRIM}-4.0.0-r1 please stabilize

  793914 - Assigned to Gentoo Science Related Packages
• dev-perl/Bio-ASN1-EntrezGene-1.730.0: stabilisation

  804699 - Assigned to Gentoo Science Related Packages
• sci-calculators/pcalc-5: stablereq

  899450 - Assigned to Gentoo Science Related Packages
• sci-physics/pythia-8.3.09 and friends: stablereq

  920139 - Assigned to Gentoo Science Physics related packages
• dev-perl/PDL-2.100.0 and friends: stablereq

  958667 - Assigned to Gentoo Science Related Packages
• dev-perl/PDL-2.100.0 and friends: stablereq

  958677 - Assigned to Gentoo Science Related Packages
• dev-python/pandas-2.3.3, dev-python/pyarrow-22.0.0, dev-python/statsmodels-0.14.6, dev-python/tables-3.10.2-r1 and dev-python/xarray-2025.12.0: stablereq

  961010 - Assigned to Tupone Alfredo
• dev-python/numpy-2.3.2: stablereq

  961255 - Assigned to Gentoo Science Related Packages
• sci-libs/libcerf-2.5: stablereq

  965229 - Assigned to Gentoo Science Related Packages
• dev-libs/icu-78.2, media-gfx/inkscape-1.4.3 and sci-libs/gdal-3.12.1 stabilisation

  968777 - Assigned to Gentoo Office Team
• sci-libs/vtk-9.5.2: stablereq

  968821 - Assigned to Paul Zander
• sci-libs/openblas-0.3.31: stablereq

  970810 - Assigned to Michał Górny

Keywording Bug Reports

• SELinux: Keywording preliminary set of packages for PowerPC[64]

  674848 - Assigned to ppc64 architecture team
• dev-python/qtconsole: Add ~ppc64 keyword

  874045 - Assigned to Gentoo Science Related Packages
• media-gfx/freecad (and dependencies): arm64 keywording

  881653 - Assigned to Paul Zander
• dev-python/pyamg: rekeyword

  904497 - Assigned to Gentoo Science Related Packages
• sci-libs/blis-1.0 arm(64) keyword request

  933473 - Assigned to Michał Górny
• dev-python/pandas: Add ~ppc64 keyword

  937754 - Assigned to Gentoo Science Related Packages
• TeX Live 2024 re-keywording

  946199 - Assigned to TeX project
• dev-libs/cvector ppc64 keyword request

  965378 - Assigned to Gentoo Science Related Packages