Gentoo Project

Science Project

Bug Reports

• dev-libs/double-conversion USE=static-libs should be reinstated

  705330 - Assigned to sci
• dev-python/numpy-1.16.5: fortran related tests fail

  707116 - Assigned to sci
• sys-cluster/charm: missing python_check_deps()

  708592 - Assigned to nicolasbock
• sci-libs/parmetis-4.0.3-r1 - QA Notice: The following files contain insecure RUNPATHs: .../usr/lib64/libparmetis.so

  709598 - Assigned to sci
• media-gfx/tachyon-0.99_beta6-r1 : * sed failed

  710486 - Assigned to alexxy
• sci-libs/mathgl-2.4.1-r2 : /.../fltk.cpp: error: thr was not declared in this scope

  711154 - Assigned to sci
• sci-libs/pastix-5.2.3 : ebuild uses colon (:) as a sed delimiter

  711156 - Assigned to sci
• sci-libs/cholmod-3.0.13 : configure: error: Could not find ccolamd library

  711540 - Assigned to sci
• sci-libs/clblast-0.10.0: CMake Error at /.../FindPackageHandleStandardArgs.cmake:146: Could NOT find OpenCL (missing: OPENCL_LIBRARIES)

  711990 - Assigned to sci
• dev-cpp/eigen-3.3.7 fails tests: 753 - openglsupport (Failed)

  712808 - Assigned to sci
• dev-perl/USB-LibUSB-0.60.0 with musl : /.../perl.h: error: unknown type name off64_t

  713744 - Assigned to musl
• dev-libs/libf2c-20130927-r1 : uninit.c: fatal error: fpu_control.h: No such file or directory

  714642 - Assigned to musl
• sci-libs/sundials-6.2.0 fails tests on x86

  715556 - Assigned to sci
• sci-libs/cholmod-3.0.13: emake failed: nvcc fatal: Unknown option '-fPIC'

  715610 - Assigned to sci
• sci-libs/hdf-4.2.13-r1 : local_nc.h: fatal error: rpc/types.h: No such file or directory

  715632 - Assigned to musl
• dev-perl/Lab-VXI11-0.30.0 : /.../perl.h: error: unknown type name off64_t

  715690 - Assigned to musl
• sci-libs/coinor-alps-1.5.7 : AlpsSubTree.cpp: error: variable AlpsSubTree::exploreUnitWork(bool, int, double, AlpsExitStatus&, int

  715916 - Assigned to musl
• sci-visualization/xd3d-8.3.1-r1 : * configure failed.

  716114 - Assigned to musl
• sci-libs/hdf5-1.10.5-r1 fails 8 tests on ppc

  716672 - Assigned to ppc
• sci-libs/ogdi-4.1.0-r1 installs shared libraries that lack a SONAME

  717178 - Assigned to sci
• dev-python/matplotlib GUI front end USE flag required

  720196 - Assigned to sci
• sci-libs/ipopt-3.12.12 cannot had hsl use flag

  720998 - Assigned to sci
• sci-libs/ogdi fails tests

  721358 - Assigned to sci
• sci-libs/coinor-clp-1.17.6 : ClpFactorization.cpp: error: double CoinFactorization::ftranCountInput_ is protected within this cont

  721930 - Assigned to sci
• sci-libs/coinor-cbc-2.10.5 : CbcCutGenerator.cpp: error: class CglTreeInfo has no member named parentSolver

  721932 - Assigned to sci
• sci-libs/lemon-1.3.1 : /.../ld: /.../libClp.so: undefined reference to CoinArrayWithLength::conditionalNew(long)

  722620 - Assigned to sci
• dev-libs/libtecla-1.6.3-r1 does not respect LDFLAGS

  723046 - Assigned to sci
• sci-libs/libticalcs2-1.1.9 configure error when /bin/sh != bash

  723452 - Assigned to sci
• sci-libs/gmsh License appears to be incorrect

  723788 - Assigned to licenses
• sys-cluster/charm calls g++ directly

  725440 - Assigned to nicolasbock
• sci-libs/cminpack fails tests

  725456 - Assigned to sci
• sci-libs/ogdi-4.1.0-r1 calls ar directly

  725618 - Assigned to sci
• sci-libs/netcdf-cxx fails tests

  725620 - Assigned to sci
• sci-libs/o2scl-0.920 fails tests

  725622 - Assigned to sci
• dev-python/blosc-1.11.1 : One or more CMake variables were not used by the project:

  727396 - Assigned to sci
• sys-cluster/charm-6.8.2 does not respect CFLAGS/LDFLAGS

  727962 - Assigned to nicolasbock
• sys-cluster/charm-6.8.2 installs shared libraries that lack a SONAME

  727964 - Assigned to nicolasbock
• sys-cluster/charm calls commands that do not exist (../bin/../include/conv-mach-gfortran.sh: line 21: and: command not found)

  727968 - Assigned to nicolasbock
• sci-libs/arprec-2.2.19 installs shared libraries that lack NEEDED entries

  727972 - Assigned to sci
• sci-libs/spqr-2.0.9-r2 : I can't find file `epsf'.

  729634 - Assigned to sci
• sci-libs/spqr-2.0.9 - qrdemoc.c:(.text.startup+0x94): undefined reference to `cholmod_l_norm_sparse'

  729636 - Assigned to sci
• <dev-python/numpy-1.19.0: pypy3 fortran tests fail

  729966 - Assigned to sci
• sci-libs/umfpack-5.7.9 fails tests

  731248 - Assigned to sci
• sci-libs/coinor-symphony-5.5.7 fails to compile: ordered comparison between pointer and zero ('int *' and 'int')

  731856 - Assigned to sci
• sci-libs/colpack-1.0.10 fails to compile: GraphColoring/GraphColoring.cpp:974:20: error: expected an OpenMP directive

  731900 - Assigned to sci
• sci-libs/sundials-5.2.0 fails to compile: ld.lld: error: can't create dynamic relocation R_X86_64_32 against local symbol in readonly segment

  731904 - Assigned to sci
• sci-libs/arprec calls commands that do not exist (./configure: line 5219: ax_cxx_fma: command not found)

  731912 - Assigned to sci
• sci-libs/arprec-2.2.19 fails to compile: erfc.cpp:43:33: error: non-constant-expression cannot be narrowed from type

  731916 - Assigned to sci
• sci-libs/dealii-9.4.1-r1 installs compressed files (manpages, documentation)

  731918 - Assigned to tamiko
• sci-libs/cqrlib fails to compile

  731928 - Assigned to sci
• sci-visualization/fig2sxd-0.22.1 fails to compile: zipwrite.cpp:92:32: error: non-constant-expression cannot be narrowed from type

  732018 - Assigned to sci
• dev-python/scikit-build-0.11.1: needs Fortran for tests

  732180 - Assigned to sci
• dev-python/simpy fails to compile

  732830 - Assigned to sci
• dev-python/simpy-3.0.13 fails tests

  738372 - Assigned to sci
• dev-python/pycuda-2019.1.2 fails tests

  738882 - Assigned to sci
• dev-python/matplotlib-3.3.0 fails test

  739542 - Assigned to sci
• sci-calculators/tilp2-1.18-r1 installs metainfo files into /usr/share/appdata

  741212 - Assigned to sci
• sci-chemistry/mdtraj-1.9.7 fails to link with LLD because of /usr/lib in the link command line

  741320 - Assigned to sci
• sci-libs/cgnslib-3.4.0 fails to compile: ld.lld: error: can't create dynamic relocation R_X86_64_32 against local symbol in readonly segment

  741388 - Assigned to sci
• sci-libs/coinor-os-2.10.1 fails to compile: clang-10: error: no such file or directory: openmp'

  741430 - Assigned to sci
• sci-libs/hdf5-1.10.5-r1 fails tests

  741438 - Assigned to sci
• sci-libs/h5hut-1.99.13 fails to compile: h5_hdf5_private.h:937:40: error: incompatible type for argument 3 of ‘H5Pset_fapl_mpio’

  741440 - Assigned to junghans
• sci-libs/h5part-1.6.6 fails to link with LLD because of /usr/lib in the link command line

  741444 - Assigned to junghans
• sci-libs/minuit-5.34.14 fails tests

  741508 - Assigned to sci
• sci-libs/lemon-1.3.1 fails tests

  741512 - Assigned to sci
• sci-libs/nfft-3.3.2 fails tests

  741528 - Assigned to junghans
• sci-libs/pastix-5.2.3 fails tests

  741532 - Assigned to sci
• sci-misc/nco-4.5.1-r2 fails to compile: nco_omp.c:210:53: error: variable 'fp_stderr' must have explicitly specified

  741592 - Assigned to sci
• sci-libs/spqr-2.0.9 fails tests

  741604 - Assigned to sci
• sci-visualization/grace-5.1.25_p13-r1 does not respect LDFLAGS

  741640 - Assigned to sci
• sci-visualization/xyscan-4.3.0 fails to link with LLD because of /usr/lib in the link command line

  741652 - Assigned to sci
• sys-cluster/ampi-0_pre20140616 fails tests

  741933 - Assigned to sci
• dev-python/line_profiler-3.0.2 fails to compile

  742635 - Assigned to sci
• dev-cpp/eigen-3.3.7 fails to build tests - /var/tmp/portage/dev-cpp/eigen-3.3.7/work/eigen-3.3.7/Eigen/src/Core/MathFunctions.h:623:50: error: invalid use of incomplete type ‘struct Eigen::internal::make_unsigned<long long int>’

  743172 - Assigned to sci
• dev-python/scipy fails test test_bisplev_integer_overflow Fatal Python error: Segmentation fault

  743295 - Assigned to sci
• app-eselect/eselect-cblas: drop package, cblas is handled by eselect-blas

  747118 - Assigned to sci
• sci-libs/clblast: enable BLAS/CBLAS drop in replacement functionality

  747142 - Assigned to sci
• sci-libs/blis: make eselect-ldso behaviour default and remove eselect-ldso flag

  747301 - Assigned to sci
• sci-libs/openblas: make eselect-ldso behaviour default and remove eselect-ldso flag

  747313 - Assigned to sci
• app-eselect/eselect-blas-0.1: drop package

  747325 - Assigned to sci
• dev-util/numdiff-5.9.0 QA Notice: Colliding files found by ecompress

  749897 - Assigned to tamiko
• dev-python/scipy-1.8.1 fails to compile: source.c:(.text.startup+0x8c): undefined reference to `cblas_ddot'

  750320 - Assigned to sci
• sci-libs/pastix-5.2.2.22-r1: parallel build error: i686-pc-linux-gnu/bin/ld: cannot open output file /var/tmp/portage/sci-libs/pastix-5.2.2.22-r1/image//usr/lib/libmatrix_driver_32bit_nompi_smp_int_double_real_scotch_.so: No such file or directory

  754321 - Assigned to sci
• dev-python/matplotlib-3.3.2 fails test

  754324 - Assigned to sci
• dev-cpp/eigen-3.3.7-r1 fails to build tests eigen-3.3.7-r1/work/eigen-3.3.7/unsupported/test/forward_adolc.cpp:14: /usr/lib/gcc/i686-pc-linux-gnu/9.3.0/include/g++-v9/chrono:280:6: error: macro "max" requires 2 arguments, but only 1 given

  754327 - Assigned to sci
• sci-libs/mkl: symlink provider for BLAS CBLAS LAPACK LAPACKE no longer works

  754930 - Assigned to sci
• sci-libs/scikit-image-0.17.2-r1 fails to compile

  755443 - Assigned to sci
• sci-libs/libticonv-1.1.5 :torture_ticonv.c:(.text.startup+<snip>): undefined reference to ticonv_iconv_open

  756718 - Assigned to sci
• dev-python/numpy: automagically linking against libflame.so

  757510 - Assigned to sci
• sci-libs/lapack-3.9.0 fails to build with existing ninja versions

  760153 - Assigned to sci
• sci-libs/openblas-0.3.13 static lib missing

  762670 - Assigned to sci

Stabilization Bug Reports

• sci-libs/roc{FFT,RAND,SPARSE,Thrust,PRIM}-4.0.0-r1 please stabilize

  793914 - Assigned to sci
• dev-perl/Bio-ASN1-EntrezGene-1.730.0: stabilisation

  804699 - Assigned to sci
• dev-tex/rubber-1.6.0-r1: stabilisation

  807400 - Assigned to flow
• sci-libs/armadillo-10.8.2: stabilisation

  818640 - Assigned to dilfridge
• sci-libs/pastix-6.0.3: stabilisation

  818646 - Assigned to sci
• x11-misc/xaos-4.2.1_p20210828: stabilisation

  833720 - Assigned to sci
• sci-libs/netcdf-4.8.1-r2: stabilisation

  851468 - Assigned to sci
• dev-python/cairocffi-1.4.0: stablereq

  879481 - Assigned to python
• dev-python/matplotlib-3.6.2: stablereq

  880781 - Assigned to sci
• dev-python/scipy-1.9.3: stablereq

  883529 - Assigned to sci
• sci-libs/netcdf-4.9.0 stabilisation then (EAPI7-)cleanup

  886889 - Assigned to sci
• dev-libs/pegtl-3.2.5 stabilisation then (EAPI7-)cleanup, blocked by sci-libs/vtk

  887505 - Assigned to sci
• dev-python/pandas-1.5.2: stablereq

  888363 - Assigned to sci
• app-office/impressive-0.13.1: stabilization

  889834 - Assigned to sci
• media-libs/openimageio-2.4.6.0-r1: security stabilization

  889976 - Assigned to sci
• dev-python/scipy-1.10.0: stabilisation

  892367 - Assigned to sci

Keywording Bug Reports

• SELinux: Keywording preliminary set of packages for PowerPC[64]

  674848 - Assigned to ppc64
• sci-libs/vtk ~ppc keywordreq (was: sci-mathematics/maxima-5.44.0-r8: dropped keywords ~ppc)

  778293 - Assigned to sci-mathematics
• sys-libs/llvm-libunwind MIPS/PPC32/SPARC keywording

  779742 - Assigned to llvm
• dev-python/ipython: part 1 of full keywording

  831219 - Assigned to python
• dev-python/GridDataFormats: rekeyword

  833832 - Assigned to sci
• dev-python/hatchling & new revdeps: alpha rekeyword

  837098 - Assigned to python
• dev-python/scipy: rekeywording

  862330 - Assigned to sci
• dev-python/Levenshtein: rekeyword

  873814 - Assigned to python
• dev-python/qtconsole: Add ~ppc64 keyword

  874045 - Assigned to sci
• media-gfx/freecad (and dependencies): arm64 keywording

  881653 - Assigned to waebbl-gentoo
• dev-python/comm: ~mips keywording request

  882425 - Assigned to python
• dev-python/jupyter_server-2 rekeyword request

  887521 - Assigned to python
• dev-python/jupyter_events: ~mips keywording request

  887827 - Assigned to sci
• dev-python/scipy: rekeywording

  889812 - Assigned to sci
• dev-python/sympy: Add ~ppc64 keyword

  892183 - Assigned to grozin