Gentoo Developer

Matthias Maier

Bug Reports

• dev-cpp/kokkos-3.7.1 : /.../Kokkos_Stacktrace.cpp: fatal error: execinfo.h: No such file or directory

  712748 - Assigned to Gentoo musl team
• sci-libs/gmsh License appears to be incorrect

  723788 - Assigned to Licenses team
• sci-libs/dealii-9.5.2-r1 installs compressed files (manpages, documentation)

  731918 - Assigned to Matthias Maier
• dev-util/numdiff-5.9.0 QA Notice: Colliding files found by ecompress

  749897 - Assigned to Matthias Maier
• dev-lang/julia-bin-1.8.3 installs files with unresolved SONAME dependencies

  764095 - Assigned to Matthias Maier
• sci-libs/trilinos-13.0.1 calls python directly (dev-lang/python-exec[-native-symlinks])

  776391 - Assigned to Matthias Maier
• sci-mathematics/dsfmt-2.2.4 fails tests

  780933 - Assigned to Gentoo Science Related Packages
• dev-lang/julia-1.6.0 build fails due to a missing library dependence in libsuitesparseconfig.so

  781242 - Assigned to Gentoo Science Related Packages
• dev-lang/julia: enable polly and polly-openmp support for automatic parallelization

  784245 - Assigned to Gentoo Science Related Packages
• dev-lang/julia-1.8.5-r1 does not respect CFLAGS/LDFLAGS

  788943 - Assigned to Gentoo Science Related Packages
• dev-lang/julia-1.8.5-r1 installs files that contain writable and executable sections

  788946 - Assigned to Gentoo Science Related Packages
• sci-visualization/paraview license review

  789552 - Assigned to Licenses team
• dev-lang/julia-1.6.0 when compiled with -D_GLIBCXX_ASSERTIONS: signal (6): Aborted in expression starting at none:0 gsignal at /lib64/libc.so.6

  792744 - Assigned to Gentoo Science Related Packages
• dev-lang/julia-1.6.3-r1 fails tests

  814806 - Assigned to Gentoo Science Related Packages
• dev-lang/julia-1.6.3 calls gfortran directly

  814809 - Assigned to Gentoo Science Related Packages
• sci-libs/ginkgo-1.4.0 - configure fails: Could not find a package configuration file provided by "hipblas"

  814845 - Assigned to Matthias Maier
• sci-libs/gmsh: bundles dev-cpp/picojson

  828029 - Assigned to Matthias Maier
• dev-lang/julia-1.8.5-r1 fails to compile: Make.inc:1207: "Attempting to build OpenBLAS or SuiteSparse without a functioning fortran compiler!"

  830570 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.4.0-r3 - /.../Kokkos_Stacktrace.cpp: fatal error: execinfo.h: No such file or directory

  830687 - Assigned to Gentoo musl team
• dev-lang/julia-bin-1.10.0 installs files with unresolved SONAME dependencies (on MUSL)

  830819 - Assigned to Matthias Maier
• dev-lang/julia-1.7.1-r4 hangs during install

  835629 - Assigned to Gentoo Science Related Packages
• sci-libs/p4est-2.8-r1 installs files into unexpected paths

  837044 - Assigned to Matthias Maier
• sci-mathematics/petsc-3.17.1 installs more files with FEATURES=test

  847634 - Assigned to Matthias Maier
• sci-mathematics/slepc-3.17.1 installs more files with FEATURES=test

  847637 - Assigned to Matthias Maier
• sci-mathematics/petsc-3.17.1 provide petsc4py

  847922 - Assigned to Matthias Maier
• dev-cpp/taskflow-3.3.0 fails tests (MUSL)

  864172 - Assigned to Matthias Maier
• dev-cpp/kokkos-3.7.0 fails tests: 4 - KokkosCore_UnitTest_LogicalSpaces (Failed)

  877527 - Assigned to Matthias Maier
• dev-cpp/kokkos-3.7.0 installs files that contain insecure RUNPATHs

  883245 - Assigned to Matthias Maier
• dev-lang/julia-1.8.5-r1 one or more CMake variables were not used by the project

  885435 - Assigned to Gentoo Science Related Packages
• sci-visualization/paraview-5.11.0_rc2-r1 overwrites user's optimization (-O*)

  886323 - Assigned to Matthias Maier
• sci-mathematics/slepc-3.18.1 fails tests

  888733 - Assigned to Matthias Maier
• dev-util/numdiff-5.9.0 fails to compile (DASH-SYSTEM): sh: 1: [: yes: unexpected operator

  888833 - Assigned to Matthias Maier
• sci-visualization/paraview: file collision with sci-libs/vtk

  889340 - Assigned to Matthias Maier
• dev-lang/julia-1.8.3-r2 missing libopenblas64_.so file to use Arpack_jll

  890166 - Assigned to Matthias Maier
• dev-lang/julia-1.8.3-r4 fails to compile: System library symlink failure: Unable to locate libspqr.so on your system!

  894190 - Assigned to Matthias Maier
• sci-libs/trilinos-13.4.1 fails to compile (MUSL-CLANG-SYSTEM): trilinos_klu_factor.c:506:19: error: call to undeclared function omp_get_num_threads; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

  898272 - Assigned to Matthias Maier
• sci-libs/gmsh-4.10.3 fails to compile (MUSL-CLANG-SYSTEM): edgegen.c:1680:18: error: call to undeclared library function strlen with type unsigned long (const char ); ISO C99 and later do not support implicit function declarations [-Wimplicit-function-de

  898280 - Assigned to Matthias Maier
• sci-visualization/paraview-5.12.0_rc1-r1 one or more CMake variables were not used by the project: VTK_GROUP_ENABLE_Tk

  904731 - Assigned to Matthias Maier
• dev-lang/julia-1.8.5-r1 adds -Werror flag on its own

  905448 - Assigned to Matthias Maier
• dev-lang/julia-1.8.5-r1 fails to compile (MUSL-SYSTEM): raw_ostream.cpp:807:11: error: ::lseek64 has not been declared

  906355 - Assigned to Matthias Maier
• app-text/doxygen-1.13.0-r1 installs files into unexpected paths

  906860 - Assigned to Matthias Maier
• app-text/doxygen-1.9.7-r1 fails test - 61 - 061_Únicod€_file (Failed)

  907904 - Assigned to Matthias Maier
• app-text/doxygen-1.9.6 (with USE=+doc) fails with: error: Failed to extract bounding box from generated diagram file /var/tmp/portage/app-text/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/class_a__coll__graph.pdf

  907951 - Assigned to Matthias Maier
• =sci-libs/trilinos-14.0.0: optimization CXXFLAGS not respected

  908835 - Assigned to Matthias Maier
• app-text/doxygen-1.9.7-r1 hitting "input buffer overflow, can't enlarge buffer because scanner uses REJECT"

  912261 - Assigned to Matthias Maier
• app-text/doxygen-1.9.7-r1 +doc installs SVG files in .bz2 form

  913584 - Assigned to Matthias Maier
• app-text/doxygen-1.9.8 - Error: Error: fontconfig: Didnt find expected font family. Perhaps URW Type 1 fonts need installing?

  916205 - Assigned to Matthias Maier
• dev-lang/julia-1.8.5-r1 error: failed to decompress '.debug_aranges', zlib is not available

  921323 - Assigned to Matthias Maier
• app-shells/zsh has incorrect LICENSE

  921331 - Assigned to Matthias Maier
• app-shells/zsh-5.9-r4 fails tests

  922315 - Assigned to Matthias Maier
• sci-visualization/paraview-5.12.0_rc1-r1 fails to compile: collect2: error: ld returned 1 exit status

  923379 - Assigned to Matthias Maier
• dev-lang/julia-1.8.5-r1 fails to compile: clang++: error: unknown argument: -fno-gnu-unique

  923882 - Assigned to Matthias Maier
• app-text/doxygen-1.10.0-r1: fails to compile (LIBCXX-CLANG19): implicit instantiation of undefined template 'std::char_traits<unsigned char>'

  924551 - Assigned to Matthias Maier
• sci-chemistry/gelemental-2.0.2 calls commands that do not exist: dot

  924698 - Assigned to Matthias Maier
• app-shells/zsh-5.9-r6 has implicit function declarations in configure logs

  924725 - Assigned to Matthias Maier
• sci-libs/p4est-2.8.5-r3 fails to compile: mv failed

  924972 - Assigned to Matthias Maier
• dev-util/numdiff-5.9.0 fails to compile: cp: cannot create regular file #INST@751#: No such file or directory

  925583 - Assigned to Matthias Maier
• sci-libs/trilinos-15.0.0 fails to compile: Tpetra_Distributor.hpp:829:34: error: static assertion failed: Tpetra::Distributor::computeSends: sizeof(size_t) < sizeof(OrdinalType)

  928017 - Assigned to Matthias Maier
• app-shells/gentoo-zsh-completions ebuild package help is not up to date

  930067 - Assigned to Matthias Maier
• app-shells/zsh-5.9-r6 fails test - emake failed

  930677 - Assigned to Matthias Maier
• sci-mathematics/petsc-3.20.5-r1 does not build with mpi

  932452 - Assigned to Matthias Maier
• app-text/doxygen-1.10.0-r1 - configuration file example.cfg not found with dev-build/ninja-1.12.1

  932673 - Assigned to Matthias Maier
• sci-libs/trilinos-16.0.0 one or more CMake variables were not used by the project

  934031 - Assigned to Matthias Maier
• sci-libs/trilinos-16.0.0 fails to compile: gtest-all.cc:9037:26: error: uintptr_t does not name a type

  939068 - Assigned to Matthias Maier
• >=app-text/doxygen-1.9.8 fails creating doxygen_manual: pdfTeX error: /usr/bin/pdflatex (file pcrro8r): Font pcrro8r at 480 not found

  940171 - Assigned to Matthias Maier
• sci-libs/p4est-2.8.6 fails tests

  942121 - Assigned to Matthias Maier
• dev-util/numdiff-5.9.0 fails to compile: getopt.c:264:47: error: too many arguments to function getenv

  944113 - Assigned to Matthias Maier
• sci-mathematics/slepc-3.21.1 - [meson] [libtool] makefile:28: libslepcvariables: No such file or directory

  945252 - Assigned to Matthias Maier
• app-shells/gentoo-zsh-completions: outdated equery changes option

  945358 - Assigned to Mike Gilbert
• sci-mathematics/petsc-3.22.2 - econf failed

  946335 - Assigned to Matthias Maier
• app-text/doxygen: missing dev-texlive/texlive-fontutils dependency for epstopdf (was: app-crypt/gpgme-1.24.1: error: Problems running epstopdf. Check your TeX installation!)

  947394 - Assigned to Matthias Maier
• app-shells/zsh-5.9-r6: Ebuild changes the etcdir from upstream default, zsh(1) page doesn't reflect this

  947747 - Assigned to Mike Gilbert
• sci-libs/trilinos-16.0.0 fails to compile: KokkosSparse_spadd_handle.hpp:113:44: error: class KokkosSparse::SPADDHandle<lno_row_view_t_, lno_nnz_view_t_, scalar_nnz_view_t_, ExecutionSpace, MemorySpace> has no member named sort_option [-Wtemplate-body]

  948101 - Assigned to Matthias Maier
• sci-mathematics/petsc-3.22.2 with USE=scotch: error: passing argument 3 of ‘ISCreateGeneral’ from incompatible pointer type [-Wincompatible-pointer-types]

  949488 - Assigned to Matthias Maier
• sci-libs/gmsh-4.13.1-r1[gmm] - error: ‘MUMPS_solve’ is not a member of ‘gmm’

  949489 - Assigned to Matthias Maier
• dev-lang/mmix-20160804-r2 - [texlive] [glibc] [gcc-15] [ffmpeg] emake failed

  949667 - Assigned to Matthias Maier
• dev-util/cloc-2.04 version bump

  951358 - Assigned to Matthias Maier
• dev-lang/julia: all Python 3.12-compatible versions are masked

  952142 - Assigned to Matthias Maier
• sci-visualization/paraview: needs porting to Python 3.13

  952703 - Assigned to Matthias Maier
• app-text/doxygen-1.13.2 - [llvm] string: error: implicit instantiation of undefined template std::char_traits<unsigned char>

  953360 - Assigned to Matthias Maier
• sci-mathematics/slepc-3.22.1 - [meson] [gcc-15] [cmake-4] gmake[1]: No rule to make target lib/.../slepcvariables. Stop.

  954118 - Assigned to Matthias Maier
• dev-util/numdiff-5.9.0 - [cmake-4] QA Notice: Colliding files found by ecompress:

  954280 - Assigned to Matthias Maier
• dev-lang/julia-1.9.4-r2 deps/srccache/llvm-julia-14.0.6-3/llvm/include/llvm/ADT/SmallVector.h:88:69: error: 'uint64_t' was not declared in this scope

  955955 - Assigned to Matthias Maier
• dev-cpp/taskflow-3.10.0 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957421 - Assigned to Matthias Maier
• sci-mathematics/petsc-3.23.3 fails to configure with USE=cuda

  959268 - Assigned to Matthias Maier
• sci-mathematics/petsc-3.23.3 - zitfuncf.c: error: type of kspconvergeddefaultdestroy_ does not match original declaration [-Werror=lto-type-mismatch]

  959326 - Assigned to Matthias Maier
• sci-libs/gmsh CMake Error at CMakeLists.txt:754 (message): Could not find GLU: disabling OpenGL support

  960011 - Assigned to Matthias Maier
• sci-visualization/paraview-5.13.3-r3 - [meson] [jdk25] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  961186 - Assigned to Matthias Maier
• dev-cpp/taskflow-3.10.0 fails test - [gcc-16] 1019 - InclusiveScan.string.1thread (Failed)

  961562 - Assigned to Matthias Maier
• dev-lang/julia-1.8.5-r3 - CMake Error at CMakeLists.txt:23 (cmake_minimum_required)

  961923 - Assigned to Matthias Maier
• sci-libs/gmsh-4.14.0 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4

  963573 - Assigned to Matthias Maier
• sci-mathematics/slepc-3.23.1 - [meson] [gcc-16] [boost-1.89] ImportError: cannot import name generatefortranbindings from utils (/.../_init_.py)

  963574 - Assigned to Matthias Maier
• sci-libs/gmsh-4.14.1 - fatal error: ap.h: No such file or directory

  963599 - Assigned to Matthias Maier

Keywording Bug Reports

• media-gfx/freecad (and dependencies): arm64 keywording

  881653 - Assigned to Paul Zander